Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G14
         (73 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0174 - 11485684-11485962                                         29   0.69 
03_05_0439 + 24319464-24320102                                         25   6.4  

>10_06_0174 - 11485684-11485962
          Length = 92

 Score = 28.7 bits (61), Expect = 0.69
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 73  WRERYKAGRGAPHTGWW 23
           WR R K    +PH GWW
Sbjct: 61  WRWRKKPSSSSPHGGWW 77


>03_05_0439 + 24319464-24320102
          Length = 212

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 18  PYHHPVWGAPRPA 56
           PY  P+WG P PA
Sbjct: 93  PYGRPLWGLPAPA 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,399
Number of Sequences: 37544
Number of extensions: 15070
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 14,793,348
effective HSP length: 5
effective length of database: 14,605,628
effective search space used: 262901304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)