Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G14
         (73 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    20   3.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   3.1  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    19   5.5  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 3   TMPTTPYH 26
           T PT+PYH
Sbjct: 257 TKPTSPYH 264


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 18  PYHHPVWGAPRPAL 59
           PY H VW +  P++
Sbjct: 467 PYDHLVWNSWMPSI 480


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = +3

Query: 15  TPYHHP 32
           TP+HHP
Sbjct: 462 TPHHHP 467


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,565
Number of Sequences: 438
Number of extensions: 100
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 5
effective length of database: 144,153
effective search space used:  2594754
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)