Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_G13
(361 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 194 3e-51
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 194 3e-51
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 194 3e-51
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 103 1e-23
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 99 2e-22
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 55 3e-09
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 51 5e-08
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 45 3e-06
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 41 5e-05
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.003
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.003
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 28 0.38
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 27 0.88
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 27 1.2
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 26 1.5
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 2.0
SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated |Schizosac... 26 2.0
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 25 2.7
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 3.5
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 25 3.5
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 25 3.5
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 25 3.5
SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 3.5
SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex s... 25 4.7
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 25 4.7
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa... 25 4.7
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 24 6.2
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 24 6.2
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 24 8.2
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom... 24 8.2
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 194 bits (474), Expect = 3e-51
Identities = 89/99 (89%), Positives = 94/99 (94%)
Frame = +2
Query: 65 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKDAQEIFKGSFKYAWVL 244
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEK+A E+ KGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 245 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFI 361
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFI
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFI 99
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 194 bits (474), Expect = 3e-51
Identities = 89/99 (89%), Positives = 94/99 (94%)
Frame = +2
Query: 65 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKDAQEIFKGSFKYAWVL 244
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEK+A E+ KGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 245 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFI 361
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFI
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFI 99
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 194 bits (474), Expect = 3e-51
Identities = 89/99 (89%), Positives = 94/99 (94%)
Frame = +2
Query: 65 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKDAQEIFKGSFKYAWVL 244
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEK+A E+ KGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 245 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFI 361
DKLKAERERGITIDIALWKFET KY VT+IDAPGHRDFI
Sbjct: 61 DKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFI 99
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 103 bits (246), Expect = 1e-23
Identities = 46/92 (50%), Positives = 64/92 (69%)
Frame = +2
Query: 86 INIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKDAQEIFKGSFKYAWVLDKLKAER 265
+++VV GHVDSGKST G ++++ G I+ R+++K +A KGSF YAW+LD + ER
Sbjct: 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEER 237
Query: 266 ERGITIDIALWKFETGKYYVTIIDAPGHRDFI 361
RG+T+D+A FE+ K I DAPGHRDFI
Sbjct: 238 ARGVTMDVASTTFESDKKIYEIGDAPGHRDFI 269
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 98.7 bits (235), Expect = 2e-22
Identities = 42/95 (44%), Positives = 66/95 (69%)
Frame = +2
Query: 77 KVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKDAQEIFKGSFKYAWVLDKLK 256
K H+NIV IGHVD+GKST G++++ G +D+RT+EK E++A+E K S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 257 AERERGITIDIALWKFETGKYYVTIIDAPGHRDFI 361
ERE+G T+++ FET +++DAPGH+ ++
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYV 330
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 55.2 bits (127), Expect = 3e-09
Identities = 35/97 (36%), Positives = 49/97 (50%)
Frame = +2
Query: 71 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKDAQEIFKGSFKYAWVLDK 250
++K H+NI IGHVD GK+T T I KC ++ + SF +DK
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDK 93
Query: 251 LKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFI 361
E+ RGITI A ++ET + +D PGH D+I
Sbjct: 94 APEEKARGITISSAHVEYETANRHYAHVDCPGHADYI 130
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 51.2 bits (117), Expect = 5e-08
Identities = 32/90 (35%), Positives = 45/90 (50%)
Frame = +2
Query: 89 NIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKDAQEIFKGSFKYAWVLDKLKAERE 268
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76
Query: 269 RGITIDIALWKFETGKYYVTIIDAPGHRDF 358
RGITI+ A F + +ID PGH DF
Sbjct: 77 RGITINSAAISFTWRNQRINLIDTPGHADF 106
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 45.2 bits (102), Expect = 3e-06
Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Frame = +2
Query: 89 NIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKDAQEIFKGSFKYAWVLDKLKAERE 268
N VI H+D GKST + ++ G I+E F+ F LDKL+ ER
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHN-----------FRNQF-----LDKLEVERR 103
Query: 269 RGITIDI----ALWKFETGKYYVTIIDAPGHRDF 358
RGIT+ ++ + Y + +ID PGH DF
Sbjct: 104 RGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDF 137
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 41.1 bits (92), Expect = 5e-05
Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 19/109 (17%)
Frame = +2
Query: 89 NIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKDAQEIFKGSFKYAWVLDKLKAERE 268
NI + H+DSGK+T T ++Y G I KD E+ +G +D ++ ERE
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI---------KDIHEV-RGKDNVGAKMDFMELERE 110
Query: 269 RGITIDIA----LWK---------------FETGKYYVTIIDAPGHRDF 358
+GITI A W+ FE Y + IID PGH DF
Sbjct: 111 KGITIQSAATHCTWERTVDQIEANEKQKTDFEK-SYNINIIDTPGHIDF 158
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.003
Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Frame = +2
Query: 65 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTI--EKF-EKDAQEIFKGSFKYA 235
MGK N+ VI HVD GKST T L+ K G I +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 236 WVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDF 358
+ L AE D+ + + V +ID+PGH DF
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDF 111
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.003
Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Frame = +2
Query: 65 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTI--EKF-EKDAQEIFKGSFKYA 235
MGK N+ VI HVD GKST T L+ K G I +F + A E +G +
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKS 72
Query: 236 WVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDF 358
+ L AE D+ + + V +ID+PGH DF
Sbjct: 73 TAI-SLFAEMTDDDMKDMK-EPADGTDFLVNLIDSPGHVDF 111
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 28.3 bits (60), Expect = 0.38
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 7/97 (7%)
Frame = +2
Query: 89 NIVVIGHVDSGKSTTTGHLIYKCGGIDER---TIEKFEKDAQEIFKG----SFKYAWVLD 247
N ++ HVD GK+T L+ G I + T+ + EI +G S +
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRGITMKSSAISLFFK 80
Query: 248 KLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDF 358
+ E+ + D Y + +ID+PGH DF
Sbjct: 81 VISQNDEKRVEKD----------YLINLIDSPGHVDF 107
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 27.1 bits (57), Expect = 0.88
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +2
Query: 209 IFKGSFKYAWVLDKLKAER-ERGITIDIALWKFETGKYYV--TIIDAPGHRDFI 361
+F + K +K++A+ E+ + I+I + E +++ T+ID PG DFI
Sbjct: 48 LFSTTIKSHMGPEKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFI 101
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 26.6 bits (56), Expect = 1.2
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +2
Query: 77 KVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKDAQEIFKGSFKY 232
KV+ +++I ++D G L G ID+ T + +KDA+ + +F+Y
Sbjct: 591 KVNAQVMLIKNIDD--QLVNGSLGKVIGFIDDETYQMEKKDAEMQGRNAFEY 640
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 26.2 bits (55), Expect = 1.5
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = +2
Query: 272 GITIDIALWK--FETGKYYVTIIDAPGHRDF 358
GIT I + F+ G ++T +D PGH F
Sbjct: 203 GITQKIGAFTVPFDKGSKFITFLDTPGHMAF 233
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.8 bits (54), Expect = 2.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 113 DSGKSTTTGHLIYKCGGIDE 172
+S K TT GH++ +C IDE
Sbjct: 1881 NSVKFTTEGHILLRCMAIDE 1900
>SPCC1235.07 |fta7|sma7, cnl3|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 2.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 285 SMVIPRSRSAFSLSNTQAYLKEPLKISWASFSN 187
+M I SR A S YLK+ LKIS +FS+
Sbjct: 132 NMAINNSRLADLKSKLHPYLKKGLKISHDNFSD 164
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.4 bits (53), Expect = 2.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 126 PQQLVT*STNAVVSTNVPSKSSRRTPRKFLRVPSNTLGYWT 248
PQ + ++ V S V S SR T R+ P N+ Y T
Sbjct: 76 PQHPASINSRRVASYTVQSSPSRTTYRQLPNEPQNSAAYTT 116
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 3.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 59 PKMGKEKVHINIVVIGHVDSGKST 130
P + + INI IGHV GKST
Sbjct: 15 PAIISRQATINIGTIGHVAHGKST 38
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 25.0 bits (52), Expect = 3.5
Identities = 18/60 (30%), Positives = 30/60 (50%)
Frame = -2
Query: 339 ASMMVT*YLPVSNFQRAISMVIPRSRSAFSLSNTQAYLKEPLKISWASFSNFSMVRSSIP 160
AS + Y ++ R ++ + P +R + S YL+ PL S S S + +R+SIP
Sbjct: 309 ASTALNSYSTPNSVSRKLTNLTPAARRLVARS----YLRSPLHGSSPSASRHTALRTSIP 364
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 25.0 bits (52), Expect = 3.5
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1
Query: 67 HFWLVTDYNQRVISEIASCRIS 2
HF LV++ ++R SEIA RIS
Sbjct: 705 HFTLVSETSKRAPSEIAVVRIS 726
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 3.5
Identities = 8/20 (40%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +1
Query: 277 HHRY-CSLEVRNRQILCHHH 333
HH++ C L V+N+++ H H
Sbjct: 196 HHKFFCDLCVKNKKVFTHEH 215
>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 491
Score = 25.0 bits (52), Expect = 3.5
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 89 NIVVIGHVDSGKSTTTGHLIYKCGGI-DERTIEKFEKDAQEIFKG 220
++ V+G +SGKST L + G+ +E ++ F + KG
Sbjct: 211 HVYVVGEANSGKSTLLKTLAKRGNGVFNELLLDSFLPGTTQAIKG 255
>SPAC17G8.04c |arc15|arc5, arc5|ARP2/3 actin-organizing complex
subunit Arc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 24.6 bits (51), Expect = 4.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 297 QRAISMVIPRSRSAFSLSNTQAYLKEPLKISWASFSN 187
Q A+S +IP++RSA N LK L S+ + N
Sbjct: 33 QAAVSQLIPQARSAIQTGNALQGLKTLL--SYVPYGN 67
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 24.6 bits (51), Expect = 4.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +2
Query: 95 VVIGHVDSGKSTTTGHLIYKCGGIDERTI 181
+V+GH GK+T +Y+ G + I
Sbjct: 45 IVLGHTGCGKTTQIPQFLYEAGWASQNGI 73
>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
transaminase |Schizosaccharomyces pombe|chr 2|||Manual
Length = 696
Score = 24.6 bits (51), Expect = 4.7
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 101 IGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKDAQEIFKGSFKY 232
I HV G+ L + GG RTIE E + + KG++ +
Sbjct: 297 IAHVRDGE-LHVHRLRREGGGSTTRTIETLEMEIASVMKGNYDH 339
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 24.2 bits (50), Expect = 6.2
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 92 IVVIGHVDSGKSTTTGHLIYKC 157
IVV+G SGKST + +C
Sbjct: 115 IVVVGETGSGKSTQIPQFLNEC 136
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 24.2 bits (50), Expect = 6.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 59 VSHGLQSACNIRDSLVPNI 3
++HGL N DS++PN+
Sbjct: 790 MAHGLFGKVNTNDSVIPNV 808
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 23.8 bits (49), Expect = 8.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +2
Query: 92 IVVIGHVDSGKSTTTGHLIYKCG 160
++V+G SGK+T +Y+ G
Sbjct: 511 LIVVGETGSGKTTQLAQFLYEDG 533
>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 23.8 bits (49), Expect = 8.2
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 285 SMVIPRSRSAFSLSNTQAYLKEPLKISWASFSNFSMVRSSIP 160
S+ + R + + +N QA L E +I + S +RSSIP
Sbjct: 3 SVEVNRENADVANTNRQANLAEGYEIKELNESQKQYIRSSIP 44
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,488,198
Number of Sequences: 5004
Number of extensions: 27338
Number of successful extensions: 109
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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