Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G13
         (361 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   204   2e-55
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   204   2e-55
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    93   1e-21
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    60   1e-11
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.36 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   0.48 
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   4.4  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   4.4  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   4.4  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   4.4  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   4.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   7.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   7.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   7.7  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    20   7.7  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  204 bits (498), Expect = 2e-55
 Identities = 93/99 (93%), Positives = 97/99 (97%)
 Frame = +2

Query: 65  MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKDAQEIFKGSFKYAWVL 244
           MGKEK+HINIVVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEK+AQE+ KGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 245 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFI 361
           DKLKAERERGITIDIALWKFET KYYVTIIDAPGHRDFI
Sbjct: 61  DKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFI 99


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  204 bits (498), Expect = 2e-55
 Identities = 93/99 (93%), Positives = 97/99 (97%)
 Frame = +2

Query: 65  MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDERTIEKFEKDAQEIFKGSFKYAWVL 244
           MGKEK+HINIVVIGHVDSGKSTTTGHLIYKCGGID+RTIEKFEK+AQE+ KGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 245 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFI 361
           DKLKAERERGITIDIALWKFET KYYVTIIDAPGHRDFI
Sbjct: 61  DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFI 99


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 92.7 bits (220), Expect = 1e-21
 Identities = 41/42 (97%), Positives = 41/42 (97%)
 Frame = +2

Query: 236 WVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFI 361
           WVLDKLKAERERGITIDIALWKFET KYYVTIIDAPGHRDFI
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFI 42


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 59.7 bits (138), Expect = 1e-11
 Identities = 25/26 (96%), Positives = 25/26 (96%)
 Frame = +2

Query: 284 DIALWKFETGKYYVTIIDAPGHRDFI 361
           DIALWKFET KYYVTIIDAPGHRDFI
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFI 26


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 0.36
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 77  KVHINIVVIGHVDSGKST 130
           K H  + ++GHVD GK+T
Sbjct: 143 KRHPIVTIMGHVDHGKTT 160



 Score = 22.2 bits (45), Expect = 1.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 323 VTIIDAPGHRDFI 361
           VT +D PGH  FI
Sbjct: 195 VTFLDTPGHAAFI 207


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 24.2 bits (50), Expect = 0.48
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +2

Query: 86  INIVVIGHVDSGKST 130
           INI  IGHV  GKST
Sbjct: 43  INIGTIGHVAHGKST 57


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 194 SRTFRWYVRRYHRICRSSDQLL 129
           +R +R   R+Y ++C   ++LL
Sbjct: 9   NREYRKKDRQYEKLCNEEEKLL 30


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 194 SRTFRWYVRRYHRICRSSDQLL 129
           +R +R   R+Y ++C   ++LL
Sbjct: 9   NREYRKKDRQYEKLCNEEEKLL 30


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 194 SRTFRWYVRRYHRICRSSDQLL 129
           +R +R   R+Y ++C   ++LL
Sbjct: 9   NREYRKKDRQYEKLCNEEEKLL 30


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = -3

Query: 194 SRTFRWYVRRYHRICRSSDQLL 129
           +R +R   R+Y ++C   ++LL
Sbjct: 9   NREYRKKDRQYEKLCNEEEKLL 30


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -3

Query: 182 RWYVRRYHRIC 150
           RW + ++HR+C
Sbjct: 186 RWDLGKFHRVC 196


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 150  TNAVVSTNVPSKSSRRTPRKFLRVPSNTLGYWTN 251
            TNA   +   S+S  R   ++ RVPS   G  T+
Sbjct: 1767 TNASAHSRSGSQSMPRQNGRYSRVPSQGGGSGTH 1800


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -1

Query: 334 DDGDIVFAGFELPESNIDGDTTLTLGL*FVQYPSVFEGTLKNFLGV 197
           D+GD +FA +++     +GD  +++G  F  YP+   GT K  L V
Sbjct: 351 DNGDRIFAEYDIINIQENGD-QVSVGRYF--YPN---GTEKMTLSV 390


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +1

Query: 325 HHHRRSWTQ 351
           HH  +SWTQ
Sbjct: 405 HHGSKSWTQ 413


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 331 DGDIVFAGFELPESNIDGDTT 269
           DG I  A F + +  I GD T
Sbjct: 121 DGHIKIADFGMCKEGISGDKT 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,662
Number of Sequences: 438
Number of extensions: 1906
Number of successful extensions: 18
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)