Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_G12
(342 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 163 7e-42
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 120 6e-29
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 109 2e-25
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 94 5e-21
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 87 7e-19
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 73 1e-14
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 70 1e-13
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 68 3e-13
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 67 6e-13
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 65 2e-12
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 63 1e-11
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 62 2e-11
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 60 9e-11
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 59 2e-10
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 55 3e-09
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 54 8e-09
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 54 8e-09
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 52 3e-08
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 50 1e-07
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 50 1e-07
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 49 2e-07
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 48 3e-07
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 48 5e-07
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 37 0.001
SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual 26 1.8
SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 4.3
SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase Trp4|S... 25 4.3
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 24 5.6
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 24 5.6
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c... 24 7.5
SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2... 24 7.5
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 24 7.5
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 24 7.5
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr... 24 7.5
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos... 23 9.8
SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr ... 23 9.8
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po... 23 9.8
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 163 bits (396), Expect = 7e-42
Identities = 74/96 (77%), Positives = 85/96 (88%)
Frame = +3
Query: 21 QARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI 200
Q RDL RGVEI IATPGRL+D L+ TNL+R TYLVLDEADRMLDMGFEPQIRKI+DQI
Sbjct: 238 QIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQI 297
Query: 201 RPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSL 308
RPDRQT+M+SATWPKEV++LA DYL DY+Q+ +GSL
Sbjct: 298 RPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSL 333
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 120 bits (289), Expect = 6e-29
Identities = 56/106 (52%), Positives = 75/106 (70%), Gaps = 3/106 (2%)
Frame = +3
Query: 15 REQARDLERGVEIVIATPGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRK 185
++Q DL+RG EIV+ TPGR+ID L TNL RCTYLVLDEADRM D+GFEPQ+ +
Sbjct: 532 KDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMR 591
Query: 186 IIDQIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQTICT 323
II+ IRPDRQT+++SAT+P+ + LA L V+I +G + +
Sbjct: 592 IINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVAS 637
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 109 bits (261), Expect = 2e-25
Identities = 50/100 (50%), Positives = 75/100 (75%), Gaps = 4/100 (4%)
Frame = +3
Query: 15 REQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIID 194
R Q R +++G +++ ATPGRL+D +++G +L +LVLDEADRMLDMGFEPQIR I++
Sbjct: 296 RAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMGFEPQIRHIVE 355
Query: 195 QIR----PDRQTLMWSATWPKEVRKLAEDYLGDYVQINIG 302
+RQTLM+SAT+P++++ LA D+L DYV +++G
Sbjct: 356 GADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVG 395
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 94.3 bits (224), Expect = 5e-21
Identities = 52/102 (50%), Positives = 65/102 (63%), Gaps = 6/102 (5%)
Frame = +3
Query: 18 EQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQ 197
EQAR + ++I TPGRL+D + G+ + + YLVLDEADRMLD GFE IR II
Sbjct: 278 EQAR-AAKNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISH 336
Query: 198 IRPD------RQTLMWSATWPKEVRKLAEDYLGDYVQINIGS 305
PD RQT+ +SATWP+ VR LA +L D V+I IGS
Sbjct: 337 -TPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGS 377
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 87.0 bits (206), Expect = 7e-19
Identities = 49/116 (42%), Positives = 68/116 (58%), Gaps = 19/116 (16%)
Frame = +3
Query: 18 EQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQ 197
EQ+ + +G IV+ATPGRL+D LE+ L +CTY+V+DEADRMLDMGFE + KI+
Sbjct: 367 EQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSS 426
Query: 198 IRPD-------------------RQTLMWSATWPKEVRKLAEDYLGDYVQINIGSL 308
+ RQT+M+SAT P V LA+ YL + V + IG++
Sbjct: 427 LPSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNI 482
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 72.9 bits (171), Expect = 1e-14
Identities = 42/97 (43%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Frame = +3
Query: 21 QARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIID 194
QA L + +++ TPGRL+D LE KG + L+ YL++DEADR+LDM F P I KI+
Sbjct: 157 QAVALSKKPHVLVCTPGRLMDHLENTKGFS-LKNLKYLIMDEADRLLDMDFGPIIDKILK 215
Query: 195 QIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGS 305
I +R+TL++SAT +V KL L V++ + S
Sbjct: 216 IIPHERRTLLFSATMTSKVEKLQRASLHQPVRVAVSS 252
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 69.7 bits (163), Expect = 1e-13
Identities = 33/95 (34%), Positives = 53/95 (55%)
Frame = +3
Query: 15 REQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIID 194
R+ L V IV+ TPGR++D KG + CT V+DEAD++L F P I +++
Sbjct: 153 RDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPIIEQLLS 212
Query: 195 QIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINI 299
+RQ ++SAT+P V+ + +L +IN+
Sbjct: 213 YFPKNRQISLYSATFPLIVKNFMDKHLNKPYEINL 247
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 68.1 bits (159), Expect = 3e-13
Identities = 41/90 (45%), Positives = 62/90 (68%), Gaps = 4/90 (4%)
Frame = +3
Query: 6 ARGREQARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQI 179
A R +A L +GV +++ATPGRL+D L+ KG + LV+DEADR+L++GFE ++
Sbjct: 199 ANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFV-FRNLRSLVIDEADRILEIGFEDEM 257
Query: 180 RKIIDQIRP--DRQTLMWSATWPKEVRKLA 263
R+I+ +I P +RQTL++SAT +V LA
Sbjct: 258 RQIM-KILPSENRQTLLFSATQTTKVEDLA 286
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 67.3 bits (157), Expect = 6e-13
Identities = 32/93 (34%), Positives = 52/93 (55%)
Frame = +3
Query: 15 REQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIID 194
R+ L+ GV +V+ TPGR+ D +++ VLDEAD ML GF+ QI I
Sbjct: 128 RDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADEMLSRGFKDQIYDIFQ 187
Query: 195 QIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQI 293
+ P Q ++ SAT P++V ++ ++ D ++I
Sbjct: 188 LLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRI 220
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 65.3 bits (152), Expect = 2e-12
Identities = 35/94 (37%), Positives = 53/94 (56%)
Frame = +3
Query: 18 EQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQ 197
EQ L +IV+ATPGR + + L Y+V DEADR+ +MGF Q+ +I+
Sbjct: 181 EQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQLTEILHA 240
Query: 198 IRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINI 299
+ RQTL++SAT P+ + A+ L D V + +
Sbjct: 241 LPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRL 274
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 63.3 bits (147), Expect = 1e-11
Identities = 35/99 (35%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
Frame = +3
Query: 21 QARDLERGVEIVIATPGRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGFEPQIRKIIDQ 197
Q ++L + +IVIATPGR ID + ++ +V+DEADRML+ GF ++ +II
Sbjct: 373 QEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLEDGFADELNEIIQA 432
Query: 198 IRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQT 314
RQT+++SAT +V L L V++ + + +T
Sbjct: 433 CPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKT 471
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 62.1 bits (144), Expect = 2e-11
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Frame = +3
Query: 15 REQARDLERGVEIVIATPGRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGFEPQIRKII 191
+E+ L R + I++ TPGRL+ +++ + L+LDEADR+LDMGF + I+
Sbjct: 152 KEEKERLSR-MNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTTLDAIV 210
Query: 192 DQIRPDRQTLMWSATWPKEVRKLA 263
+ RQT+++SAT K V+ LA
Sbjct: 211 SSLPVHRQTMLFSATQTKSVKDLA 234
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 60.1 bits (139), Expect = 9e-11
Identities = 29/89 (32%), Positives = 50/89 (56%)
Frame = +3
Query: 27 RDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRP 206
+ L+ G +V TPGR+ D + + + L+LDEAD +L+ GF+ QI I + P
Sbjct: 134 KKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQIYDIYRYLPP 193
Query: 207 DRQTLMWSATWPKEVRKLAEDYLGDYVQI 293
Q ++ SAT P++V ++ + + V+I
Sbjct: 194 GTQVVVVSATLPQDVLEMTNKFTTNPVRI 222
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 58.8 bits (136), Expect = 2e-10
Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 14/102 (13%)
Frame = +3
Query: 18 EQARDLERGVEIVIATPGRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGFEPQIRKIID 194
E+AR + +GV I+I TPGRL D LE ++ + ++VLDE DR++DMGFE + KI+
Sbjct: 262 EKAR-IRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEETLTKILS 320
Query: 195 QIR------------PDRQ-TLMWSATWPKEVRKLAEDYLGD 281
+ P R+ T++ SAT V++L++ L D
Sbjct: 321 YLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLSDSALKD 362
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 54.8 bits (126), Expect = 3e-09
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Frame = +3
Query: 21 QARDLERGVEIVIATPGRLIDFL----EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKI 188
Q+ DL + +V+ATPGRL D + E+ L+R +LV+DEADR+L F +
Sbjct: 118 QSIDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDC 177
Query: 189 IDQI--RPDRQTLMWSATWPKEVRKL 260
+ DRQTL+++AT +R+L
Sbjct: 178 FSVLPASEDRQTLLFTATVTDAIRQL 203
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 53.6 bits (123), Expect = 8e-09
Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Frame = +3
Query: 18 EQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIID 194
E +D + IV+ATPGRL + + + + VLDE D++L+ + I+++
Sbjct: 165 EAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVDMRRDIQEVFR 224
Query: 195 QIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINI 299
P +Q +M+SAT E+R + + ++ + ++I +
Sbjct: 225 ATPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYV 259
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 53.6 bits (123), Expect = 8e-09
Identities = 27/67 (40%), Positives = 43/67 (64%)
Frame = +3
Query: 36 ERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQ 215
E+ +VI TPGRL + L ++ + L+LDEAD ++DMGF+ ++ II Q+ R+
Sbjct: 130 EKNPSVVIGTPGRLNEMLSHISS--KHLEILILDEADTLIDMGFQRTLQSIISQLPKQRR 187
Query: 216 TLMWSAT 236
T ++SAT
Sbjct: 188 TGLFSAT 194
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 51.6 bits (118), Expect = 3e-08
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Frame = +3
Query: 3 SARGREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCT-YLVLDEADRMLDMGFEPQI 179
+++ RE+ ++IATPGRL D L+ T +LDEADR++DMGF I
Sbjct: 150 NSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAESI 209
Query: 180 RKIIDQIRPDR-QTLMWSATWPKEVRKLAEDYLG-DYVQIN 296
I + + + + L +SAT P +V + LG D+ IN
Sbjct: 210 LNIHEAVTTTKTRKLCFSATMPPKVSNVFRGILGTDFKLIN 250
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 49.6 bits (113), Expect = 1e-07
Identities = 24/71 (33%), Positives = 38/71 (53%)
Frame = +3
Query: 48 EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMW 227
+IVIATP R + + G L + +LV+DEAD ML G+ ++ + + Q+ +
Sbjct: 142 DIVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLM 201
Query: 228 SATWPKEVRKL 260
SAT K + L
Sbjct: 202 SATLSKNIASL 212
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 49.6 bits (113), Expect = 1e-07
Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +3
Query: 48 EIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIDQIRPDRQTLM 224
+IVI TPG ++D +++ + + VLDEAD MLD G Q +I + + Q ++
Sbjct: 232 QIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVL 291
Query: 225 WSATWPKEVRKLAEDYLGDYVQINI 299
+SAT+ + V K AE + + +I +
Sbjct: 292 FSATFSERVEKYAERFAPNANEIRL 316
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 48.8 bits (111), Expect = 2e-07
Identities = 19/53 (35%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Frame = +3
Query: 45 VEIVIATPGRLIDFLEKGTT-NLQRCTYLVLDEADRMLDMGFEPQIRKIIDQI 200
++++++TPGRL+D + + +LQ Y+V+DEADR+LD F+ + ++ +I
Sbjct: 261 IDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEI 313
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 48.4 bits (110), Expect = 3e-07
Identities = 28/87 (32%), Positives = 51/87 (58%), Gaps = 6/87 (6%)
Frame = +3
Query: 15 REQARDLERGVEIVIATPGRLIDFLEKG--TTNLQRCTYLVLDEADRMLDMGFEPQIRKI 188
++Q R L + +V+ATPGRL + + T N ++ LVLDEADR+L ++ K+
Sbjct: 233 QKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFEELSKL 292
Query: 189 ID----QIRPDRQTLMWSATWPKEVRK 257
++ + RQT ++SAT+ + +++
Sbjct: 293 LEILGNPMHTQRQTFIFSATFDEGLQQ 319
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 47.6 bits (108), Expect = 5e-07
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Frame = +3
Query: 15 REQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIID 194
+E+A L ++ I TP RL+ ++ G + ++ + V+DEADR+ + GF Q I+
Sbjct: 157 QEKAPKLREKYDMCIGTPMRLVQAIQTGLS-FEKVEFFVMDEADRLFEPGFIEQTDHILS 215
Query: 195 QIRPDR-QTLMWSATWPKEVRKLAEDYLGDYVQINIG 302
++SAT P V +LA+ D ++I +G
Sbjct: 216 ACTSSNICKSLFSATIPSRVEELAKVVTVDPIRIIVG 252
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 36.7 bits (81), Expect = 0.001
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Frame = +3
Query: 27 RDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFE-PQIRKIIDQIR 203
R L++G+E VI TP RL+ ++ + NLQR +++ + M M + P + I ++
Sbjct: 135 RCLKKGLECVIETPPRLLMNKDEISLNLQRLSHMETILSKLMPSMSLDLPSLEAKIAELS 194
Query: 204 PDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSLQT 314
Q T+P +V L + LG Y Q+ + QT
Sbjct: 195 ESLQ------TYPDKV--LTDIELGSYQQVTLNETQT 223
>SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 25.8 bits (54), Expect = 1.8
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 156 DMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGD 281
D+GFE R+I D L+ P+E L +D + D
Sbjct: 157 DVGFEKPSREIFDYAMEKAVKLLGQEIQPEECMHLGDDLIKD 198
>SPBC18E5.09c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 128
Score = 24.6 bits (51), Expect = 4.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 67 GVAITISTPLSKSRACSLP 11
GV +S PL+K R+CS P
Sbjct: 36 GVFCYVSRPLTKERSCSHP 54
>SPBC16G5.08 |trp4||phosphoribosylanthranilate transferase
Trp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 354
Score = 24.6 bits (51), Expect = 4.3
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Frame = -2
Query: 287 DIVS*IILCKFPYFFWPCCRP--HKSLPIRAYL 195
+IVS CKF + F P C P PIR L
Sbjct: 151 NIVSITEQCKFSFLFAPMCHPTLKNVAPIRKQL 183
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 24.2 bits (50), Expect = 5.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 9 RGREQARDLERGVEIVIATPGRLIDFLEKGTTNLQ 113
R E+ R +ERG +IV + P ++ L+ NL+
Sbjct: 633 RHDERCRVVERGSKIVASMPSKMAVVLQMPRGNLE 667
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 24.2 bits (50), Expect = 5.6
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +3
Query: 105 NLQRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMW 227
NL + + + D + + F P I+ DR+TL+W
Sbjct: 313 NLNQRLHTLEGHEDIVTKISFSPHEEPILASTSADRRTLVW 353
>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 154
Score = 23.8 bits (49), Expect = 7.5
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -2
Query: 263 CKFPYFFWPCCRPHKS 216
C FPY PC + H+S
Sbjct: 19 CSFPYCSLPCWKIHQS 34
>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 23.8 bits (49), Expect = 7.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 201 RPDRQTLMWSATWPKEVRKLAED 269
R +R TL S +P+E + L+ED
Sbjct: 272 RSERDTLNVSTEFPEETKDLSED 294
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 23.8 bits (49), Expect = 7.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 224 HKSLPIRAYLVDNFPNLWLKTHIQHAISFIK 132
H+SL R V P+LW +++H S I+
Sbjct: 140 HESLKYRLQGVTTDPSLWGHEYVRHLASEIE 170
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 23.8 bits (49), Expect = 7.5
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +3
Query: 51 IVIATPGRLIDFLEKGTTNLQRCTYLVLDEADR 149
+ TP +++ ++ G + R + LV+DEA R
Sbjct: 168 VFFVTPQTILNDIKHGICDRTRISCLVIDEAHR 200
>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 508
Score = 23.8 bits (49), Expect = 7.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -3
Query: 220 RVCLSGRIWSIIFLICG 170
R L R W +IF+ICG
Sbjct: 214 RTSLPMRGWKLIFIICG 230
>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 584
Score = 23.4 bits (48), Expect = 9.8
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +3
Query: 279 DYVQINIGSLQTICTS*HPSN 341
+Y NI + +C S HP N
Sbjct: 245 EYFSTNISEREKVCVSLHPHN 265
>SPBC8D2.13 |||SHQ1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 451
Score = 23.4 bits (48), Expect = 9.8
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 215 LPIRAYLVDNFPNLWL 168
LP R+YL+DN N++L
Sbjct: 266 LPKRSYLIDNPKNVYL 281
>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 23.4 bits (48), Expect = 9.8
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = -3
Query: 202 RIWSIIFLICGSK 164
RIW ++FL+ GSK
Sbjct: 334 RIWDLLFLLGGSK 346
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,457,937
Number of Sequences: 5004
Number of extensions: 27630
Number of successful extensions: 125
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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