Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G11
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0507 + 3655570-3655573,3655648-3655832                           66   9e-12
07_03_0447 + 18301421-18301520,18301900-18302060                       28   3.7  
03_02_0650 + 10174905-10175000,10175321-10175376,10175467-101755...    28   3.7  
02_01_0130 - 938530-939990                                             27   4.9  
12_01_0107 - 843820-846335,846400-846511                               27   6.5  
11_06_0311 - 22279202-22279690,22279976-22280103,22281249-222813...    27   6.5  
08_01_0566 - 5028512-5029150                                           27   8.6  
04_04_0562 + 26252253-26253014                                         27   8.6  

>06_01_0507 + 3655570-3655573,3655648-3655832
          Length = 62

 Score = 66.5 bits (155), Expect = 9e-12
 Identities = 32/59 (54%), Positives = 36/59 (61%)
 Frame = +2

Query: 251 GKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXSQYNRRFVNVVQTFGRRRGPNSN 427
           GKVHGSLARAGKV+GQTP                   QYNRRFV  V  FG++RGPNS+
Sbjct: 2   GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60


>07_03_0447 + 18301421-18301520,18301900-18302060
          Length = 86

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 41  MQLHIRGQSTHV-LDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLED 190
           MQ+ +R     + L+V G ++IGD+K ++     + +++  L   G  L+D
Sbjct: 1   MQIFVRTLDECITLEVEGSDTIGDVKVKIHDKNGIPADDQRLMHAGRQLDD 51


>03_02_0650 +
           10174905-10175000,10175321-10175376,10175467-10175540,
           10176215-10176753,10176845-10177186,10177520-10177879,
           10177982-10178193,10178881-10179169,10179469-10180152
          Length = 883

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 18/74 (24%), Positives = 30/74 (40%)
 Frame = +2

Query: 38  KMQLHIRGQSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSWLVSVFST 217
           ++  H  G +  V+         D++   R L+ + S     S CG   E     + FS+
Sbjct: 588 RLLAHTFGPAQRVVGSKHSSPGPDLRMASRSLSPLSSASKLCSRCGQADEPKMAATTFSS 647

Query: 218 TELDLTVPLLGGKV 259
           +   +T   LGG V
Sbjct: 648 SPSKVTTAKLGGGV 661


>02_01_0130 - 938530-939990
          Length = 486

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 285 LPARARDPCTLPPRRGTVRSSSVVEKTD-TSHESSRGAPHID 163
           LP+ +R  CT P   G+V    V+++ + T HE+S  +   D
Sbjct: 32  LPSTSRISCTEPSNGGSVMELEVMDRNEQTYHENSSASEDED 73


>12_01_0107 - 843820-846335,846400-846511
          Length = 875

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 59  GQSTHVLDVNGQES-IGDIKNRLRLLADVESEE 154
           G+ +H+LDV+G+ES I D+  +   + D + +E
Sbjct: 362 GKESHILDVDGKESHILDVDGKQNHILDEDGKE 394


>11_06_0311 -
           22279202-22279690,22279976-22280103,22281249-22281355,
           22282799-22282888,22283590-22283660
          Length = 294

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 176 HRT*TESPPHSQHQQEAGGDS*Y 108
           H T T SP H+QH Q AG    Y
Sbjct: 205 HPTNTLSPLHNQHHQSAGASQVY 227


>08_01_0566 - 5028512-5029150
          Length = 212

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
 Frame = +2

Query: 41  MQLHIRGQSTHVL--DVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSWLVSVF- 211
           MQ+ +R  +   L  +VN  +++G +K +++    + + +  L   G  LED   ++ + 
Sbjct: 1   MQIFVRTVTAGPLAVEVNPWDTVGKVKAKIQAKGGIPAAQQRLMFAGRHLEDGRTLAEYG 60

Query: 212 --STTELDLTVPLLGGKVHG 265
                 L L + L GG   G
Sbjct: 61  IKKEANLHLALRLRGGGAAG 80


>04_04_0562 + 26252253-26253014
          Length = 253

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 182 GAHRT*TESPPHSQHQQEA 126
           G HR   E+ PH++HQ++A
Sbjct: 84  GVHRDAIEAEPHTEHQRDA 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,329,367
Number of Sequences: 37544
Number of extensions: 204642
Number of successful extensions: 628
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)