Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G11
         (431 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal prote...    77   7e-15
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    25   1.8  
U28741-7|AAO38645.1|  721|Caenorhabditis elegans Synapse defecti...    28   2.5  
U28741-6|AAO21428.1|  942|Caenorhabditis elegans Synapse defecti...    28   2.5  
U28741-5|AAO38644.1|  987|Caenorhabditis elegans Synapse defecti...    28   2.5  
AF546880-1|AAN38752.1|  942|Caenorhabditis elegans axon identity...    28   2.5  
U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical pr...    27   5.8  

>U53148-5|AAB37076.1|  130|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 30 protein.
          Length = 130

 Score = 76.6 bits (180), Expect = 7e-15
 Identities = 50/135 (37%), Positives = 68/135 (50%), Gaps = 5/135 (3%)
 Frame = +2

Query: 41  MQLHIRG--QSTHVLDVNGQESIGDIKNRLRLLADVESEEVTLSMCGAPLEDSWLVS--- 205
           MQ+ + G   +TH LDV+   ++  IK  +        EE ++S     L +   +    
Sbjct: 1   MQIFLLGLDNTTHTLDVDASTTLSAIKGVIGA-----GEEFSISYGSKVLSEELTLGECQ 55

Query: 206 VFSTTELDLTVPLLGGKVHGSLARAGKVKGQTPXXXXXXXXXXXXXXXXXXSQYNRRFVN 385
           + S + L +   LLGGKVHGSLARAGKV+ QTP                   QY RR+VN
Sbjct: 56  IESLSTLSVNGRLLGGKVHGSLARAGKVRAQTPKVDKQDKKKKKRGRAFRRVQYTRRYVN 115

Query: 386 VVQTFGRRRGPNSNS 430
           V    G++RGPNSNS
Sbjct: 116 VASGPGKKRGPNSNS 130


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 24.6 bits (51), Expect(2) = 1.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 252 PPRRGTVRSSSVVEKTDTSHESSRGAP 172
           PPRRG+ R  S    T  S    RG+P
Sbjct: 216 PPRRGSPRRGSPRRDTRRSPPRRRGSP 242



 Score = 22.6 bits (46), Expect(2) = 1.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 285 LPARARDPCTLPPRR 241
           +PARA  P   PPRR
Sbjct: 174 IPARALSPRKTPPRR 188


>U28741-7|AAO38645.1|  721|Caenorhabditis elegans Synapse defective
           protein 1, isoformc protein.
          Length = 721

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 104 GDIKNRLRLLADVESEEVTLSMCGAPLEDSWLVSVFSTTEL-DLTVPLLGGKVHGSLARA 280
           G ++ +  L A++ES  +   +    + D+ +++      L +L  PL+  ++HG L  A
Sbjct: 528 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 587

Query: 281 GKV 289
             V
Sbjct: 588 ASV 590


>U28741-6|AAO21428.1|  942|Caenorhabditis elegans Synapse defective
           protein 1, isoformb protein.
          Length = 942

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 104 GDIKNRLRLLADVESEEVTLSMCGAPLEDSWLVSVFSTTEL-DLTVPLLGGKVHGSLARA 280
           G ++ +  L A++ES  +   +    + D+ +++      L +L  PL+  ++HG L  A
Sbjct: 726 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 785

Query: 281 GKV 289
             V
Sbjct: 786 ASV 788


>U28741-5|AAO38644.1|  987|Caenorhabditis elegans Synapse defective
           protein 1, isoforma protein.
          Length = 987

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 104 GDIKNRLRLLADVESEEVTLSMCGAPLEDSWLVSVFSTTEL-DLTVPLLGGKVHGSLARA 280
           G ++ +  L A++ES  +   +    + D+ +++      L +L  PL+  ++HG L  A
Sbjct: 794 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 853

Query: 281 GKV 289
             V
Sbjct: 854 ASV 856


>AF546880-1|AAN38752.1|  942|Caenorhabditis elegans axon identity
           specification proteinSYD-1 protein.
          Length = 942

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 104 GDIKNRLRLLADVESEEVTLSMCGAPLEDSWLVSVFSTTEL-DLTVPLLGGKVHGSLARA 280
           G ++ +  L A++ES  +   +    + D+ +++      L +L  PL+  ++HG L  A
Sbjct: 726 GSVEKKKMLRAELESNPLGTELAAESIPDTNVIACLIKDFLRELPEPLISPQIHGMLLEA 785

Query: 281 GKV 289
             V
Sbjct: 786 ASV 788


>U41994-9|AAK31523.1|  786|Caenorhabditis elegans Hypothetical
           protein F59A6.3 protein.
          Length = 786

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 339 PDVLSAGANTTGDS*TLSRPSAAVVDPTLT 428
           PD  +  A T+G + T SR S+A  DPT T
Sbjct: 334 PDPSTTSALTSGGTSTTSRASSASDDPTTT 363


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,202,203
Number of Sequences: 27780
Number of extensions: 161069
Number of successful extensions: 450
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)