Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_G10
(336 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 27 0.58
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 25 2.3
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 25 3.1
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 25 4.1
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce... 25 4.1
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 24 5.4
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po... 24 7.1
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 24 7.1
SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit L1... 24 7.1
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 23 9.4
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 23 9.4
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 27.5 bits (58), Expect = 0.58
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +2
Query: 116 EKFSDDSWESNWVYSEHPEKRIRQVQIDCCKVLQ 217
++F W N Y+EHP ++ CK+L+
Sbjct: 962 QRFEFTDWLYNLTYNEHPNYDTERIPAMLCKMLE 995
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 2.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 238 VYRHLKTRGSTPYRGNSSHSA 300
++R LKTRG+TP G HS+
Sbjct: 338 LFRALKTRGNTPKYGIIYHSS 358
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 25.0 bits (52), Expect = 3.1
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 95 NCEVFFEEKFSDDSWESNWVYSEHPEKRIRQ 187
N +F E+ D+SW NW E E + +
Sbjct: 603 NNPLFETEEQIDESWMENWNDEEETENNVEE 633
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 24.6 bits (51), Expect = 4.1
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = -2
Query: 173 SRGVHYI--PNLIPMNRLRIFPQRTLHNLLTKLP-INWQ*PALQISFFNSQQAPSLSKPR 3
+R H+I PNL L+ P+ T HN LT + Q +S ++P PR
Sbjct: 347 NRNGHHISDPNLNSSISLKFAPEDTAHNSLTSQENVGPQVTTTSLSNMTVAESPRTDTPR 406
>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 747
Score = 24.6 bits (51), Expect = 4.1
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 215 VVLYSSQFELAEFFSRGVHYIPNLIPMNRLRIFPQRTLHNLLTKL 81
+ L +Q +L +GV+ + LI RI P R LH L+ L
Sbjct: 526 LALSYTQSDLVPVRGQGVYMLRKLIEKKDDRINPVRVLHVLINLL 570
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 24.2 bits (50), Expect = 5.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 256 TRGSTPYRGNSSHSAMRANLRWYST 330
TR PYR S H ++ + + W ST
Sbjct: 302 TRPYIPYRTVSCHDSIVSTMHWAST 326
>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 460
Score = 23.8 bits (49), Expect = 7.1
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 191 ELAEFFSRGVHYIPNLIPMNRLRIFPQRTLHN 96
E E F++ HY+ L+ + R+F Q L +
Sbjct: 167 ETIEDFNKYCHYVAGLVGIGLSRLFAQSKLED 198
>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 23.8 bits (49), Expect = 7.1
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = -2
Query: 152 PNLIPMNRLRIFPQRTLHNLLTKLPIN 72
P+ P+ R+R F + LH+ + ++ I+
Sbjct: 79 PHFFPIKRIRPFHENPLHSFVYRIMIS 105
>SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit
L19|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 23.8 bits (49), Expect = 7.1
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -2
Query: 182 EFFSRGVHYIPNLIPMNRLRIFPQRTLHNLLTKLPINW 69
EF +R ++PN ++ + PQRT + P +W
Sbjct: 41 EFNARTAGWMPNTPVPCKITVTPQRTFTFTIHTPPTSW 78
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 23.4 bits (48), Expect = 9.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -1
Query: 93 IDEIANKLAIASTADFI 43
I EIA K A+ASTAD +
Sbjct: 398 ISEIAVKTAMASTADIL 414
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 23.4 bits (48), Expect = 9.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 153 TQFDSHESSENFSSKNTSQFIDEIANK 73
T D+H E+F S+ + FI E K
Sbjct: 220 TAGDTHLGGEDFDSRLVNHFIQEFKRK 246
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,391,852
Number of Sequences: 5004
Number of extensions: 25870
Number of successful extensions: 96
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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