Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_G10
(336 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin pr... 62 7e-11
AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin ... 62 7e-11
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ... 29 1.1
AF022976-2|AAC69081.1| 146|Caenorhabditis elegans Hypothetical ... 27 3.3
U58729-3|AAM54204.1| 955|Caenorhabditis elegans Hypothetical pr... 27 4.4
U58729-2|AAM54203.1| 913|Caenorhabditis elegans Hypothetical pr... 27 4.4
U58729-1|AAM54202.1| 928|Caenorhabditis elegans Hypothetical pr... 27 4.4
AF456360-1|AAL60231.1| 928|Caenorhabditis elegans immunoglobuli... 27 4.4
AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 prot... 26 5.8
AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 prot... 26 5.8
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 26 5.8
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 26 5.8
AF273806-1|AAG15155.1| 395|Caenorhabditis elegans nuclear recep... 26 5.8
AF022976-15|AAO26008.1| 324|Caenorhabditis elegans Nuclear horm... 26 5.8
AF022976-14|AAC69077.1| 393|Caenorhabditis elegans Nuclear horm... 26 5.8
>X59589-1|CAA42159.1| 395|Caenorhabditis elegans calreticulin
protein.
Length = 395
Score = 62.5 bits (145), Expect = 7e-11
Identities = 28/62 (45%), Positives = 46/62 (74%), Gaps = 1/62 (1%)
Frame = +3
Query: 153 YIVNTPRKEFGKFKLTAVKYYNDAEADKGLQTSEDARFYALSRKF-KPFSNEGKP*VVQY 329
++ + + +FG FKL+A K+++ D+G+QTS+DA+FY+ + KF K FSN+GK V+QY
Sbjct: 32 WVQSKHKDDFGAFKLSAGKFFDVESRDQGIQTSQDAKFYSRAAKFDKDFSNKGKTLVIQY 91
Query: 330 SV 335
+V
Sbjct: 92 TV 93
Score = 38.3 bits (85), Expect = 0.001
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +2
Query: 95 NCEVFFEEKFSDDSWESNWVYSEHPE 172
+ EV+F+E+F+D SWE WV S+H +
Sbjct: 14 SAEVYFKEEFNDASWEKRWVQSKHKD 39
>AF125963-7|AAD14746.1| 395|Caenorhabditis elegans Calreticulin
protein 1 protein.
Length = 395
Score = 62.5 bits (145), Expect = 7e-11
Identities = 28/62 (45%), Positives = 46/62 (74%), Gaps = 1/62 (1%)
Frame = +3
Query: 153 YIVNTPRKEFGKFKLTAVKYYNDAEADKGLQTSEDARFYALSRKF-KPFSNEGKP*VVQY 329
++ + + +FG FKL+A K+++ D+G+QTS+DA+FY+ + KF K FSN+GK V+QY
Sbjct: 32 WVQSKHKDDFGAFKLSAGKFFDVESRDQGIQTSQDAKFYSRAAKFDKDFSNKGKTLVIQY 91
Query: 330 SV 335
+V
Sbjct: 92 TV 93
Score = 38.3 bits (85), Expect = 0.001
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +2
Query: 95 NCEVFFEEKFSDDSWESNWVYSEHPE 172
+ EV+F+E+F+D SWE WV S+H +
Sbjct: 14 SAEVYFKEEFNDASWEKRWVQSKHKD 39
>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
protein F55F10.1 protein.
Length = 4368
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 156 YTQFDSHESSENFSSKNTSQFIDEIANKLAIASTADFI 43
+T+F ++NF SKN +FID + L+ D++
Sbjct: 437 FTKFYMEVFTKNFDSKNNQKFIDNLEKCLSSGRFKDYL 474
>AF022976-2|AAC69081.1| 146|Caenorhabditis elegans Hypothetical
protein R11G11.6 protein.
Length = 146
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 156 YTQFDS-HESSENFSSKNTSQFIDEIAN 76
YT + + +ENF SKNT+Q I ++++
Sbjct: 67 YTAYTKKQQDNENFMSKNTTQIISQLSS 94
>U58729-3|AAM54204.1| 955|Caenorhabditis elegans Hypothetical
protein F02G3.1c protein.
Length = 955
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 66 LPVYWQFRQ*IVKCSLRKNSQTIHGNQIGYIVN-TPRKEFGKFKLTAVKY 212
L V+WQF + + ++ + NQI YI + T +K+ G + A +Y
Sbjct: 176 LEVFWQFNGVTLDETSQRGYEFSENNQILYIPHFTAKKDDGIYNCNAAQY 225
>U58729-2|AAM54203.1| 913|Caenorhabditis elegans Hypothetical
protein F02G3.1b protein.
Length = 913
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 66 LPVYWQFRQ*IVKCSLRKNSQTIHGNQIGYIVN-TPRKEFGKFKLTAVKY 212
L V+WQF + + ++ + NQI YI + T +K+ G + A +Y
Sbjct: 149 LEVFWQFNGVTLDETSQRGYEFSENNQILYIPHFTAKKDDGIYNCNAAQY 198
>U58729-1|AAM54202.1| 928|Caenorhabditis elegans Hypothetical
protein F02G3.1a protein.
Length = 928
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 66 LPVYWQFRQ*IVKCSLRKNSQTIHGNQIGYIVN-TPRKEFGKFKLTAVKY 212
L V+WQF + + ++ + NQI YI + T +K+ G + A +Y
Sbjct: 149 LEVFWQFNGVTLDETSQRGYEFSENNQILYIPHFTAKKDDGIYNCNAAQY 198
>AF456360-1|AAL60231.1| 928|Caenorhabditis elegans immunoglobulin
domain-containingprotein F02G3.1 protein.
Length = 928
Score = 26.6 bits (56), Expect = 4.4
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 66 LPVYWQFRQ*IVKCSLRKNSQTIHGNQIGYIVN-TPRKEFGKFKLTAVKY 212
L V+WQF + + ++ + NQI YI + T +K+ G + A +Y
Sbjct: 149 LEVFWQFNGVTLDETSQRGYEFSENNQILYIPHFTAKKDDGIYNCNAAQY 198
>AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 protein
protein.
Length = 2693
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 156 IVNTPRKEFGKFKLTAVKYYNDAEADKGLQTSEDARFYALSRKF 287
I N R + GK++LTA+ A A+ L + + KF
Sbjct: 2547 IANVTRADAGKYELTAINPSGQANAELELTVVQSTKTVGAKPKF 2590
>AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 protein
protein.
Length = 2708
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 156 IVNTPRKEFGKFKLTAVKYYNDAEADKGLQTSEDARFYALSRKF 287
I N R + GK++LTA+ A A+ L + + KF
Sbjct: 2562 IANVTRADAGKYELTAINPSGQANAELELTVVQSTKTVGAKPKF 2605
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 156 IVNTPRKEFGKFKLTAVKYYNDAEADKGLQTSEDARFYALSRKF 287
I N R + GK++LTA+ A A+ L + + KF
Sbjct: 18373 IANVTRADAGKYELTAINPSGQANAELELTVVQSTKTVGAKPKF 18416
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 26.2 bits (55), Expect = 5.8
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 156 IVNTPRKEFGKFKLTAVKYYNDAEADKGLQTSEDARFYALSRKF 287
I N R + GK++LTA+ A A+ L + + KF
Sbjct: 18388 IANVTRADAGKYELTAINPSGQANAELELTVVQSTKTVGAKPKF 18431
>AF273806-1|AAG15155.1| 395|Caenorhabditis elegans nuclear receptor
NHR-58 protein.
Length = 395
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 152 PNLIP-MNRLRIFPQRTLHNLLTKLPIN 72
P+ P MN+ +F HN+ TK+P+N
Sbjct: 138 PSWTPHMNKGPLFKLANFHNVFTKMPVN 165
>AF022976-15|AAO26008.1| 324|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 58, isoform b protein.
Length = 324
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 152 PNLIP-MNRLRIFPQRTLHNLLTKLPIN 72
P+ P MN+ +F HN+ TK+P+N
Sbjct: 67 PSWTPHMNKGPLFKLANFHNVFTKMPVN 94
>AF022976-14|AAC69077.1| 393|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 58, isoform a protein.
Length = 393
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 152 PNLIP-MNRLRIFPQRTLHNLLTKLPIN 72
P+ P MN+ +F HN+ TK+P+N
Sbjct: 136 PSWTPHMNKGPLFKLANFHNVFTKMPVN 163
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,693,328
Number of Sequences: 27780
Number of extensions: 145638
Number of successful extensions: 453
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -