Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G10
         (336 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   3.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   4.0  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   4.0  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   5.3  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         20   7.0  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           20   9.2  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    20   9.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   9.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +1

Query: 229 RIKVYRHLKTRGSTPYRGNSSHSAMRA 309
           RIK    L T  +T ++ N SH   R+
Sbjct: 676 RIKTTEKLSTDPNTHFQVNQSHGIKRS 702


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +3

Query: 189 FKLTAVKYYNDAEADKGLQTSEDARFYALSRKFKP 293
           F L   +YY+   ADK     +   +  L R  +P
Sbjct: 16  FSLVGAEYYDTKTADKDFLLKQKKVYNLLYRVAQP 50


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +3

Query: 189 FKLTAVKYYNDAEADKGLQTSEDARFYALSRKFKP 293
           F L   +YY+   ADK     +   +  L R  +P
Sbjct: 16  FSLVGAEYYDTKTADKDFLLKQKKVYNLLYRVAQP 50


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 138 HESSENFSSKNTSQFIDE 85
           HE   N+ SKN +Q + E
Sbjct: 184 HEKLRNWFSKNVNQTVAE 201


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 134 SWESNWVYSEHPEKRIR 184
           SW+S W+   H    IR
Sbjct: 68  SWQSKWLSINHSACAIR 84


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -1

Query: 153 TQFDSHESSENFSSKNTSQFIDEIANKL 70
           T   SH+      + ++S+F +++ NKL
Sbjct: 53  TLISSHDELPGHINCDSSKFEEDLMNKL 80


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 141 NQIGYIVNTPRKEFGKFKLTAVKYYNDAEA 230
           NQ+  I+N  R + G     ++  YN+ +A
Sbjct: 200 NQVNRILNDARDKTGGSAKKSLTEYNNLKA 229


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 238 VYRHLKTRGSTPYRGNSSHSAMRAN 312
           +Y+H    G T  RG+S   A R N
Sbjct: 630 IYQHNVASGLTKARGHSLLVADRPN 654


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,854
Number of Sequences: 438
Number of extensions: 1713
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)