Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_G08
(257 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486 28 1.2
04_04_1634 + 34937087-34937198,34937652-34937790,34938263-349383... 27 1.6
12_02_0884 - 23986393-23987486,23988213-23988314,23988561-239886... 27 2.1
07_03_1104 + 24001594-24002139 27 2.1
07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,560... 27 2.1
03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218... 27 2.1
12_02_0916 - 24271151-24271894 27 2.7
09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361 27 2.7
08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413 27 2.7
06_03_1478 - 30420097-30420651 27 2.7
03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447 27 2.7
06_01_0801 - 5993726-5994160,5994811-5994969,5995071-5995211,599... 26 3.6
03_05_0291 - 22837412-22838128 26 3.6
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 26 4.8
03_04_0187 - 18236041-18236643 26 4.8
07_03_1445 + 26580293-26580610,26580814-26581314,26581411-265815... 25 6.3
07_03_1095 + 23926977-23927657 25 6.3
03_03_0181 + 15162681-15162806,15164026-15164172,15164269-151643... 25 6.3
09_04_0218 - 15755688-15756095 25 8.4
09_03_0161 - 12921692-12921880,12922664-12922739,12923045-129231... 25 8.4
04_03_0095 + 11114971-11115939,11115954-11116556 25 8.4
02_05_0201 + 26687369-26689228 25 8.4
>02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486
Length = 296
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 141 CSVCDAGFITQSSLFTHSSCH 203
C+VC GF T +L H CH
Sbjct: 169 CAVCHRGFATGQALGGHKRCH 189
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 141 CSVCDAGFITQSSLFTHSSCH 203
C+ C F++ +LF H CH
Sbjct: 68 CTECGRQFLSWKALFGHMRCH 88
>04_04_1634 +
34937087-34937198,34937652-34937790,34938263-34938334,
34938414-34938546,34938591-34938730,34939478-34939585,
34939650-34939720,34940297-34940545,34940618-34940823,
34940894-34941026,34941099-34941101,34941136-34941293,
34941420-34941683,34941869-34942114
Length = 677
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 100 TWLVICTCIIGIISAVYVTLGS*RRALSLLTRPAIRL 210
TWL+I GI+ V+V G+ + S +P+IR+
Sbjct: 288 TWLLILEISTGILLLVFVITGAITASRSCKLKPSIRI 324
>12_02_0884 -
23986393-23987486,23988213-23988314,23988561-23988642,
23989231-23989368
Length = 471
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 135 YICSVCDAGFITQSSLFTHSSCHKT 209
+ C+ CD F + ++L H SCH++
Sbjct: 118 HCCNKCDKSFRSGNALGGHMSCHRS 142
>07_03_1104 + 24001594-24002139
Length = 181
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 129 RNYICSVCDAGFITQSSLFTHSSCH 203
R ++CS+C GF T +L H H
Sbjct: 92 RRHVCSLCRRGFATGQALGGHKRFH 116
>07_01_0736 -
5600201-5600374,5600455-5600563,5601075-5601196,
5602859-5602935,5603349-5603487,5604306-5604618,
5605084-5605394,5607245-5609141,5609239-5609374,
5609519-5609607,5610424-5610507,5611112-5611191,
5611312-5611446,5612340-5612585
Length = 1303
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 99 YLVSHMHLHYRNYICSVCDAGFITQSSLFTHSSCHKTGVFXRDFCTSV 242
Y + H+ LHY S+ + +S SSC +G F +DF ++
Sbjct: 668 YEIQHVQLHYEVSCISIPQEDWRLDNS---SSSCATSGDFRKDFAANI 712
>03_06_0003 +
30921197-30921388,30921514-30921632,30921742-30921811,
30922078-30922161,30922258-30922344,30922431-30922501,
30922648-30922702,30923374-30923509,30925009-30925103,
30925203-30925357,30925435-30925543,30925761-30925817,
30925913-30926027,30926177-30926264,30926738-30927501,
30927600-30927688,30928315-30928422,30928550-30928657,
30928887-30928977,30929235-30929287,30929557-30929712,
30930763-30930825,30931491-30931535,30932075-30932130,
30933051-30933132,30933238-30933354,30933428-30933530,
30933912-30934062,30934180-30934417,30934564-30934764,
30934850-30934935,30935036-30935135
Length = 1347
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 143 ADIIPIMQVHMT-NQVTKLCQHILADVALHHSVLKPHR 33
AD+I I + + +Q+ +C+ L +A HS+ K HR
Sbjct: 810 ADLIGITEEPLDESQIAYICREALKGLAYLHSIFKVHR 847
>12_02_0916 - 24271151-24271894
Length = 247
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 129 RNYICSVCDAGFITQSSLFTHSSCHKTG 212
R + C+VC F T +L H CH G
Sbjct: 153 RAHECNVCGKAFPTGQALGGHKRCHYDG 180
>09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361
Length = 504
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 135 YICSVCDAGFITQSSLFTHSSCHK 206
Y+C +C+ GF +L H HK
Sbjct: 66 YVCEICNQGFQRDQNLQMHRRRHK 89
>08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413
Length = 533
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 135 YICSVCDAGFITQSSLFTHSSCHK 206
Y+C +C+ GF +L H HK
Sbjct: 65 YVCEICNQGFQRDQNLQMHRRRHK 88
>06_03_1478 - 30420097-30420651
Length = 184
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 126 YRNYICSVCDAGFITQSSLFTHSSCHKT 209
YR Y+C C A F T+ +L H + H T
Sbjct: 106 YR-YVCDRCKAPFETRQALGGHRASHST 132
>03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447
Length = 420
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 135 YICSVCDAGFITQSSLFTHSSCHK 206
Y+C +C GF + +L H HK
Sbjct: 31 YVCEICGQGFQREQNLQMHRRRHK 54
>06_01_0801 -
5993726-5994160,5994811-5994969,5995071-5995211,
5995999-5996097,5996180-5996542,5996929-5997150,
5997257-5997448,5997997-5998056,5998162-5998378,
5998471-5998523,5999013-5999084,5999928-6000113,
6000986-6001132,6002902-6003075,6003149-6003300,
6004269-6004360,6004549-6004710,6004875-6005053,
6005173-6005304,6005454-6005507,6006082-6006191,
6006317-6006487,6006577-6006663,6008488-6008611,
6009355-6009564
Length = 1330
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = +3
Query: 33 PMRFENGMMQCDVCENVLTKFRYLVSHM----HLHYRNYI 140
P+ F N + + + + +VSH+ H+HYRNY+
Sbjct: 330 PLEFSNSL-KAALENRSANSLKVMVSHLIVTIHIHYRNYV 368
>03_05_0291 - 22837412-22838128
Length = 238
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 141 CSVCDAGFITQSSLFTHSSCHKTG 212
CSVC F T +L H CH G
Sbjct: 157 CSVCKKTFPTGQALGGHKRCHYEG 180
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +3
Query: 129 RNYICSVCDAGFITQSSLFTHSSCHK 206
R Y CS C F T +L H + HK
Sbjct: 461 RKYECSECHKTFSTHQALGGHVAAHK 486
>03_04_0187 - 18236041-18236643
Length = 200
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 141 CSVCDAGFITQSSLFTHSSCH 203
CSVC F T +L H CH
Sbjct: 111 CSVCHRTFATGQALGGHKRCH 131
>07_03_1445 +
26580293-26580610,26580814-26581314,26581411-26581508,
26581900-26581978,26582065-26582325,26582409-26582576,
26582800-26583237
Length = 620
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 138 ICSVCDAGFITQSSLFTHSSCHKTGVFXR 224
+C C A F ++SSLF+H + F R
Sbjct: 56 LCLFCSARFDSESSLFSHCASEHRFDFYR 84
>07_03_1095 + 23926977-23927657
Length = 226
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 129 RNYICSVCDAGFITQSSLFTHSSCHK 206
R Y CSVC + +L H +CH+
Sbjct: 95 RAYECSVCGKVYWCYQALGGHMTCHR 120
>03_03_0181 +
15162681-15162806,15164026-15164172,15164269-15164355,
15165659-15165793,15165883-15165987,15166079-15166170,
15166259-15166364,15166463-15166549,15166653-15167084
Length = 438
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -1
Query: 251 RIEDTRAEVSRKNSSLMAGRVSKERALRYEPSVTYTADIIPIMQVHM 111
R+ D R +SR + +++ GR+ R LRY P + A P VH+
Sbjct: 329 RVWDVR-NMSR-SVAVLEGRIGAVRGLRYSPDGRFLAASEPADFVHV 373
>09_04_0218 - 15755688-15756095
Length = 135
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +3
Query: 135 YICSVCDAGFITQSSLFTHSSCHK 206
++C CD F + +L H + HK
Sbjct: 31 FLCMYCDRKFYSSQALGGHQNAHK 54
>09_03_0161 -
12921692-12921880,12922664-12922739,12923045-12923157,
12923250-12923477
Length = 201
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/45 (24%), Positives = 19/45 (42%)
Frame = +3
Query: 66 DVCENVLTKFRYLVSHMHLHYRNYICSVCDAGFITQSSLFTHSSC 200
DVC + LV+ + H + C++ GF+ + H C
Sbjct: 106 DVCTEASSCEIKLVAFLPSHLTSNFCTIACIGFLILGTFLEHDYC 150
>04_03_0095 + 11114971-11115939,11115954-11116556
Length = 523
Score = 25.0 bits (52), Expect = 8.4
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 96 RYLVSHMHLHYRNYICSVCDAG 161
R+ +HL R +IC +C+ G
Sbjct: 140 RHASKELHLDLRFFICPICERG 161
>02_05_0201 + 26687369-26689228
Length = 619
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 120 LHYRNYICSVCDAGFITQSSLFTHSSCHKTG 212
L YR++ C VC GF+ +L H H G
Sbjct: 33 LTYRHH-CKVCKKGFMCGRALGGHMRAHGIG 62
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,184,706
Number of Sequences: 37544
Number of extensions: 102037
Number of successful extensions: 366
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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