Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G07
         (147 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0289 + 24167246-24167411,24167584-24167708,24167744-241686...    27   2.8  

>04_04_0289 +
           24167246-24167411,24167584-24167708,24167744-24168694,
           24168788-24168940,24169251-24169475,24170102-24170587
          Length = 701

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -3

Query: 145 HLFQPLFFLLNPCLSI**AQISNVIEKCITISYISILCNVYYHYG 11
           H+F  L  L   C+++     SNVI  C  +SY+S+   VY  +G
Sbjct: 277 HVFAGLTSLHLECITVQGPCFSNVITACEKLSYLSL---VYCDFG 318


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,394,577
Number of Sequences: 37544
Number of extensions: 39264
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 14,793,348
effective HSP length: 29
effective length of database: 13,704,572
effective search space used: 260386868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)