Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G07
         (147 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   0.19 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    19   4.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    19   4.1  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    19   7.1  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 0.19
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = -3

Query: 79  NVIEKCITISYISIL 35
           N+I  C++ISY+S+L
Sbjct: 241 NLIVPCVSISYLSVL 255


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +3

Query: 66  FSMTFDICAHYIERHGLSKKK 128
           + M   IC  YIE     K+K
Sbjct: 123 YPMDIQICPIYIESFSYHKQK 143


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
          protein 9 protein.
          Length = 423

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -3

Query: 55 ISYISILCNVYYHY 14
          I Y SI+C    HY
Sbjct: 9  ILYFSIVCQAKAHY 22


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = +3

Query: 30  LHNMLI*EIVMHFSMTFDICAHYIERHGLSKKKR 131
           +HN +  +    F  + D C   I R  L K  R
Sbjct: 161 IHNSVTGKTTACFEPSLDYCVVKIPRWDLGKFHR 194


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,956
Number of Sequences: 438
Number of extensions: 479
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 29
effective length of database: 133,641
effective search space used:  2539179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)