Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_G05
(270 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 29 0.086
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 27 0.35
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 25 2.5
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 25 2.5
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 25 2.5
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 24 4.3
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 23 7.5
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 23 7.5
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 23 7.5
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 23 9.9
SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr ... 23 9.9
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 23 9.9
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 29.5 bits (63), Expect = 0.086
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +2
Query: 98 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHP 196
RKK+ T PKR MSA+M + RE++K+++P
Sbjct: 9 RKKDPNT--PKRNMSAFMFFSIENREKMKTDNP 39
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 27.5 bits (58), Expect = 0.35
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 98 RKKNKMTDKPKRPMSAYMLWLNSAREQIK 184
++K + +PKRP SAY L+ + R +IK
Sbjct: 108 KRKARDPAQPKRPPSAYNLFQKNQRSEIK 136
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 24.6 bits (51), Expect = 2.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 119 DKPKRPMSAYMLWLNSAREQIKSE 190
D PK+ +AY+L LN + E KSE
Sbjct: 218 DMPKQVKNAYILILNVSLEYEKSE 241
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 24.6 bits (51), Expect = 2.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +3
Query: 39 STSTVWLCTSSKIISKFL 92
ST T LC+S K++SKFL
Sbjct: 384 STHTGVLCSSLKLLSKFL 401
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 24.6 bits (51), Expect = 2.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 136 YVSLYAVAQQCQRTDQV*TSWAESHVIFSRRK 231
Y SL+ Q C +Q+ W ES V F R++
Sbjct: 60 YQSLFEEFQDCFENEQLDVEWVES-VTFHRKQ 90
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 23.8 bits (49), Expect = 4.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +3
Query: 15 RHEDFFWFSTSTVWLCTSSKIISKFLP 95
RH D F T T LC S + +F+P
Sbjct: 890 RHLDLQQFITKTEDLCNSVHLPKRFIP 916
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 23.0 bits (47), Expect = 7.5
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +2
Query: 71 KNNFKIFAIRKKNKMTDKPKRPMSA 145
+N +F+ + + TDKP P+S+
Sbjct: 444 ENKTPVFSFKAPSATTDKPSPPVSS 468
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 23.0 bits (47), Expect = 7.5
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -3
Query: 55 QTVDVENQKKSSCRI 11
+TVD+ENQ+ C+I
Sbjct: 699 KTVDIENQENIVCKI 713
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 23.0 bits (47), Expect = 7.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 137 MSAYMLWLNSAREQIKSEHPGLK 205
+ Y +LN+AR QIK H K
Sbjct: 627 LQIYGSYLNNARSQIKPSHSDSK 649
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 22.6 bits (46), Expect = 9.9
Identities = 7/14 (50%), Positives = 10/14 (71%)
Frame = -1
Query: 102 FLMAKILKLFLNWC 61
F++ L LF+NWC
Sbjct: 497 FVLVASLTLFVNWC 510
>SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 192
Score = 22.6 bits (46), Expect = 9.9
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 64 VHNQTVDVENQKKSSC 17
VHNQ + NQ K+SC
Sbjct: 140 VHNQLNEKMNQPKTSC 155
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 22.6 bits (46), Expect = 9.9
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = -3
Query: 208 DFQPRMFRLDLFSGTVEPQH 149
+F+P+ +R+D GT P +
Sbjct: 253 EFKPQSYRVDSLLGTARPYY 272
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 984,053
Number of Sequences: 5004
Number of extensions: 16604
Number of successful extensions: 46
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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