Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_G05
(270 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560... 36 0.006
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443... 35 0.008
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 32 0.055
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 32 0.072
04_04_0814 + 28266590-28266615,28266780-28266860,28266986-282670... 30 0.29
10_08_0745 - 20260136-20260236,20260890-20260937,20261025-202611... 29 0.51
02_04_0578 + 24020404-24021178,24021320-24021463,24022096-24022355 28 1.2
09_06_0240 + 21797458-21799369,21799636-21799784 27 1.6
01_06_0175 + 27229878-27230056,27231102-27231159,27231230-272312... 27 2.1
12_01_0156 + 1188143-1189957 26 3.6
11_01_0158 + 1307648-1309462 26 3.6
01_06_0203 - 27487469-27489787 26 3.6
12_01_1083 - 11268130-11268290,11268330-11268585,11268946-11269551 26 4.7
08_02_0849 - 21841470-21841883,21843748-21843813,21844768-218449... 26 4.7
08_02_0689 + 20066140-20066505,20067930-20068217 26 4.7
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 26 4.7
03_05_0124 + 21034963-21035181,21035618-21037466,21037485-210381... 26 4.7
03_01_0618 + 4543013-4543111,4544100-4544177,4544739-4544873,454... 25 6.3
02_01_0401 + 2927581-2927669,2927795-2927921,2928354-2928437,292... 25 6.3
12_02_1045 + 25656495-25656566,25657788-25657884,25658327-256584... 25 8.3
11_04_0179 + 14562288-14562860,14562874-14563489,14563529-145636... 25 8.3
11_03_0174 - 11235667-11235855,11236557-11236652,11236981-11237145 25 8.3
10_03_0014 - 7060587-7060730,7060813-7060981,7061444-7061613,706... 25 8.3
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358... 25 8.3
>09_06_0203 +
21555747-21555805,21555862-21555939,21556034-21556091,
21556191-21556235,21556514-21556549,21556855-21556935,
21557016-21557087,21557184-21557195
Length = 146
Score = 35.5 bits (78), Expect = 0.006
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 101 KKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK 205
K K +KPKRP SA+ +++ R+ K +HP +K
Sbjct: 27 KAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVK 61
>02_05_0261 +
27243898-27243938,27244068-27244157,27244293-27244350,
27244441-27244485,27244778-27244855,27244940-27245041,
27245150-27245173
Length = 145
Score = 35.1 bits (77), Expect = 0.008
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 98 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK 205
RKK + KPKRP SA+ ++++ R++ ++ HP K
Sbjct: 24 RKKAAASGKPKRPPSAFFVFMSEFRQEYQAAHPDNK 59
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 32.3 bits (70), Expect = 0.055
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 119 DKPKRPMSAYMLWLNSAREQIKSEHPGL 202
++PK+P S+++L+ AR Q+ E PG+
Sbjct: 412 NRPKKPASSFLLFSKEARRQLAEERPGV 439
Score = 31.5 bits (68), Expect = 0.095
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 98 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSE 190
+KK K KPK+PMSAY ++ R + +E
Sbjct: 276 KKKEKDPSKPKQPMSAYFVYTQQRRAALVAE 306
Score = 28.7 bits (61), Expect = 0.67
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 104 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHP 196
K K + K+P AY+LW +IK E P
Sbjct: 150 KGKAGHERKKPCPAYVLWCKDQWNEIKKESP 180
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 31.9 bits (69), Expect = 0.072
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +2
Query: 122 KPKRPMSAYMLWLNSAREQIKSEHPGLKVT*FLAEE 229
K KRP +A+ L+++ R++ K+EHP K +A+E
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKE 126
>04_04_0814 +
28266590-28266615,28266780-28266860,28266986-28267043,
28267143-28267187,28268653-28268721,28268821-28268931,
28269038-28269046
Length = 132
Score = 29.9 bits (64), Expect = 0.29
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 80 FKIFAIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLK 205
FK RKK KPKR ++ + +L R Q +HP K
Sbjct: 10 FKAAGKRKKAGGAGKPKRGLTPFFAFLAEFRPQYMEKHPNTK 51
>10_08_0745 -
20260136-20260236,20260890-20260937,20261025-20261165,
20261358-20261603,20261744-20262583,20263253-20263286
Length = 469
Score = 29.1 bits (62), Expect = 0.51
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +3
Query: 27 FFWFSTSTVWLCTSSKIISKFLPSGKKIK*RTSRS--GLCQPI-CCGSTVPENRSSLNIL 197
+ WF VWLC S ++S+ P K K S GL PI S +P N + + L
Sbjct: 15 YHWFVLFAVWLCGSQHVLSQKTPLEPKDKFLLSDPPIGLFDPIEISPSVLPHNANPVEPL 74
>02_04_0578 + 24020404-24021178,24021320-24021463,24022096-24022355
Length = 392
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 68 FKNNFKIFAIRKKNKMTDK--PKRPMSAYMLWLNSAREQIKSEHPGLK 205
F++ + R N++ K P R + +LWL E + S HPG +
Sbjct: 177 FRSQMQTIISRACNELGVKAVPSRRCVSLLLWLEERYETVYSRHPGFQ 224
>09_06_0240 + 21797458-21799369,21799636-21799784
Length = 686
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 170 REQIKSEHPGLKVT*FLAEEKEGESVEINER 262
RE ++S+ PGLK ++KEG+ V I +
Sbjct: 256 REAVRSKFPGLKAVLVKYKDKEGDLVTITNQ 286
>01_06_0175 +
27229878-27230056,27231102-27231159,27231230-27231274,
27232711-27232791,27232884-27232922
Length = 133
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +2
Query: 122 KPKRPMSAYMLWLNSAREQIKSEHPGLK 205
+PK+P +A+ ++ R+ K E+P +K
Sbjct: 48 RPKKPPTAFFYFMEDFRKTYKEENPSVK 75
>12_01_0156 + 1188143-1189957
Length = 604
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = -1
Query: 267 FYXXXXXXXXXXXXSAKNHVTFSPGCSDL--ICSLALLSHSI*ADIGRFGLSVILFFFLM 94
FY A + + P +D +C+L +L+H + AD RF + +
Sbjct: 10 FYARLHAAAAASAADASSPLLILPSAADADALCALKVLTHVLSADSIRFSIYPVASAAAA 69
Query: 93 AKILKLF 73
A +L F
Sbjct: 70 ASLLASF 76
>11_01_0158 + 1307648-1309462
Length = 604
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Frame = -1
Query: 267 FYXXXXXXXXXXXXSAKNHVTFSPGCSDL--ICSLALLSHSI*ADIGRFGLSVILFFFLM 94
FY A + + P +D +C+L +L+H + AD RF + +
Sbjct: 10 FYARLRAAAAASAADASSPLLILPSAADADALCALKVLTHVLSADSIRFSIYPVASAAAA 69
Query: 93 AKILKLF 73
A +L F
Sbjct: 70 ASLLASF 76
>01_06_0203 - 27487469-27489787
Length = 772
Score = 26.2 bits (55), Expect = 3.6
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = -3
Query: 184 LDLFSGTVEPQH----IG*HRPLRLVRHFIFFPDGKNFEIIFELVHNQTVD 44
+D+ G VE Q IG + LVR + F +GK+ +++E V N+++D
Sbjct: 523 IDVTRGEVEFQAEMSVIGKINHMNLVRIWGFCSEGKHKLLVYEYVENESLD 573
>12_01_1083 - 11268130-11268290,11268330-11268585,11268946-11269551
Length = 340
Score = 25.8 bits (54), Expect = 4.7
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 36 FSTSTVWLCTSSKIISKFLPSGK 104
F+T+ W S+ +SKF P GK
Sbjct: 98 FATTNTWDKCSTAFLSKFFPMGK 120
>08_02_0849 -
21841470-21841883,21843748-21843813,21844768-21844951,
21845427-21847468,21848544-21848870
Length = 1010
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +2
Query: 62 HQFKNNFKIFAIRKKNKMTDKPKRPMSAYMLWLNSAREQIKS 187
HQ K N IF RKK + +P + LWL S ++ S
Sbjct: 620 HQ-KENISIFE-RKKTSTSSEPAKETDPMDLWLTSNAQESNS 659
>08_02_0689 + 20066140-20066505,20067930-20068217
Length = 217
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 144 ADIGRFGLSVILFFFLMAKILK 79
AD+G FG + FFL+ K+++
Sbjct: 190 ADVGLFGWHALSVFFLLPKVIR 211
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 98 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPG 199
+KKNK T + KR +A ++ + +Q K H G
Sbjct: 804 KKKNKRTQRRKRKQNAQVMKQHQFEKQRKLYHAG 837
>03_05_0124 +
21034963-21035181,21035618-21037466,21037485-21038194,
21038426-21038470,21038557-21038745
Length = 1003
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 62 HQFKNNFKIFAIRKKNKMTDKPKRPMSAYMLWLNSAREQI 181
HQ ++ K I+K K+T P P +L + + E+I
Sbjct: 874 HQLSSSLKKLVIKKCEKLTRLPTIPNLTILLLMGNLSEEI 913
>03_01_0618 +
4543013-4543111,4544100-4544177,4544739-4544873,
4544971-4545078,4545397-4545525,4546191-4546306,
4546392-4546509,4547274-4547379,4547492-4547631,
4547735-4547905,4547984-4548094,4548206-4548317,
4548615-4548943,4549064-4549154,4549542-4549637,
4549710-4549780,4549868-4549980,4550353-4550434
Length = 734
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = -3
Query: 157 PQHIG*HRPLRL-VRHFIFFPDGKNFEIIFELVHNQTVDVENQKKSSCRIFA 5
P H+ R L + H F P+GK + + H DV+ + SS R A
Sbjct: 255 PMHLADTRKSNLHLTHVAFSPNGKEVLLSYSGEHVYLFDVDLENTSSVRYTA 306
>02_01_0401 +
2927581-2927669,2927795-2927921,2928354-2928437,
2928546-2928662,2928754-2928945,2929031-2929234,
2929322-2929809,2930429-2930528,2930686-2930745,
2931007-2931126,2931407-2931751
Length = 641
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +2
Query: 74 NNFKIFAIRKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKVT*FLAEE 229
+NF + + K D +A + W++ +EQ++ LK FL E+
Sbjct: 388 SNFDPYKVNGKESRRDIGNYHSAAEVSWMSVGKEQLEYASEALKKFRFLVEQ 439
>12_02_1045 +
25656495-25656566,25657788-25657884,25658327-25658419,
25658524-25658644,25659115-25659181,25659261-25659302,
25659455-25659583,25659674-25659733,25659887-25659929,
25660198-25660280,25660496-25661002,25661088-25661588
Length = 604
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 63 TSSKIISKFLPSGKKIK*RTSRSGLCQPI 149
T SK+I+KF S K+ RS C+ I
Sbjct: 107 TGSKVITKFEASAVKVTPNQMRSSACKMI 135
>11_04_0179 +
14562288-14562860,14562874-14563489,14563529-14563658,
14563694-14564540
Length = 721
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +3
Query: 15 RHEDFFWFSTSTV--WLCTSSKIISKFLPSGK 104
R + +F+ + +TV W+ S +SKF P GK
Sbjct: 89 RAKQWFYANRATVNTWVKCSMAFLSKFFPMGK 120
>11_03_0174 - 11235667-11235855,11236557-11236652,11236981-11237145
Length = 149
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/44 (20%), Positives = 24/44 (54%)
Frame = -1
Query: 210 VTFSPGCSDLICSLALLSHSI*ADIGRFGLSVILFFFLMAKILK 79
+T + C +C++A+ ++ +IG+ V ++ + + +LK
Sbjct: 102 ITVNASCHPEVCTIAIHGKNLDVEIGKRQFRVTIYESMSSSVLK 145
>10_03_0014 -
7060587-7060730,7060813-7060981,7061444-7061613,
7061701-7061879,7061978-7062043,7062394-7062567,
7062669-7062967,7063243-7063343,7063600-7063684,
7063797-7063947,7064267-7064451,7065599-7065786
Length = 636
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 68 FKNNFKIFAIRKKNKMTD 121
FK NFK+FA KK ++D
Sbjct: 607 FKRNFKVFANYKKGGVSD 624
>06_01_0501 -
3587390-3587528,3587922-3588031,3588122-3588187,
3588293-3588410,3588499-3588554,3588647-3588766,
3588937-3589035,3589443-3589490,3589534-3589545,
3590353-3590418,3591412-3591471,3592061-3592162,
3592405-3592426,3592959-3593041,3593166-3593293,
3593775-3593881,3594376-3594845
Length = 601
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +2
Query: 146 YMLWLNSAREQIKSEHPGL 202
++LW+++ R S HPGL
Sbjct: 239 FILWMSTIRTMCLSNHPGL 257
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,170,236
Number of Sequences: 37544
Number of extensions: 101819
Number of successful extensions: 272
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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