Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_G05
(270 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 33 0.028
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 33 0.037
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 33 0.037
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 33 0.037
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 32 0.048
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 30 0.20
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 30 0.20
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 30 0.20
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 30 0.20
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 30 0.20
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 29 0.34
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 29 0.60
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 29 0.60
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 29 0.60
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 29 0.60
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 28 0.79
U53344-7|AAM15599.1| 183|Caenorhabditis elegans Hypothetical pr... 25 5.6
U53344-6|AAK77632.2| 702|Caenorhabditis elegans Hypothetical pr... 25 5.6
Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z81573-3|CAB04624.3| 398|Caenorhabditis elegans Hypothetical pr... 25 7.3
AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine... 25 7.3
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 33.1 bits (72), Expect = 0.028
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 101 KKNKMTDKPKRPMSAYMLWLNSAREQIKSE 190
KK K ++PKR +AY++W N+ R +K +
Sbjct: 553 KKTKDPNEPKRATTAYIIWFNANRNSMKED 582
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 32.7 bits (71), Expect = 0.037
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 101 KKNKMTDKPKRPMSAYMLWLNSAREQIKSE 190
KK+K + PKR SAYM W ++R ++K +
Sbjct: 548 KKDKDPNAPKRATSAYMQWFLASRNELKED 577
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 32.7 bits (71), Expect = 0.037
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 104 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKV 208
K K + PKR MSA+ W+ RE+IK PG+ V
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIKK--PGMGV 53
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 32.7 bits (71), Expect = 0.037
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 104 KNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKV 208
K K + PKR MSA+ W+ RE+IK PG+ V
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIKK--PGMGV 53
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 32.3 bits (70), Expect = 0.048
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +2
Query: 110 KMTDKPKRPMSAYMLWLNSAREQIKSEHP 196
K D+ KRPM+A+M+W R+++ E+P
Sbjct: 55 KNDDRVKRPMNAFMVWSRGQRKKMALENP 83
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 30.3 bits (65), Expect = 0.20
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 98 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGL 202
R + K + KRPM+A+M+W R +I +P +
Sbjct: 169 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDM 203
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 30.3 bits (65), Expect = 0.20
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 98 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGL 202
R + K + KRPM+A+M+W R +I +P +
Sbjct: 166 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDM 200
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 30.3 bits (65), Expect = 0.20
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 98 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGL 202
R + K + KRPM+A+M+W R +I +P +
Sbjct: 272 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDM 306
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 30.3 bits (65), Expect = 0.20
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 98 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGL 202
R + K + KRPM+A+M+W R +I +P +
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDM 354
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 30.3 bits (65), Expect = 0.20
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 98 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGL 202
R + K + KRPM+A+M+W R +I +P +
Sbjct: 320 RPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDM 354
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 29.5 bits (63), Expect = 0.34
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 119 DKPKRPMSAYMLWLNSAREQIKSEHP 196
D KRPM+A+M+W R ++ ++P
Sbjct: 46 DHVKRPMNAFMVWSRGQRRKMAQDNP 71
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 28.7 bits (61), Expect = 0.60
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 98 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKV 208
++ K PKR +SA+ + R +I++ HP KV
Sbjct: 125 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKV 161
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 28.7 bits (61), Expect = 0.60
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 98 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKV 208
++ K PKR +SA+ + R +I++ HP KV
Sbjct: 124 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKV 160
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 28.7 bits (61), Expect = 0.60
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 98 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKV 208
++ K PKR +SA+ + R +I++ HP KV
Sbjct: 126 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKV 162
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 28.7 bits (61), Expect = 0.60
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 98 RKKNKMTDKPKRPMSAYMLWLNSAREQIKSEHPGLKV 208
++ K PKR +SA+ + R +I++ HP KV
Sbjct: 126 KRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKV 162
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 28.3 bits (60), Expect = 0.79
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 110 KMTDKPKRPMSAYMLWLNSAREQIKSEHPGL 202
K ++ KRPM+A+M+W R +I P +
Sbjct: 88 KSSNHIKRPMNAFMVWSQMERRKICEHQPDM 118
>U53344-7|AAM15599.1| 183|Caenorhabditis elegans Hypothetical
protein T07H6.1b protein.
Length = 183
Score = 25.4 bits (53), Expect = 5.6
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -3
Query: 217 KSRDFQPRMFRLDLFSGTVEPQHIG*HRPLRLVRHFIFFPDGKNFEIIFELV 62
K+ D F +FSG Q++ PL+L+ I FPD + + EL+
Sbjct: 57 KNGDPSTTRFSWPIFSGN-SSQYVSLDVPLKLLEGEIHFPDAQFWNTEAELI 107
>U53344-6|AAK77632.2| 702|Caenorhabditis elegans Hypothetical
protein T07H6.1a protein.
Length = 702
Score = 25.4 bits (53), Expect = 5.6
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -3
Query: 217 KSRDFQPRMFRLDLFSGTVEPQHIG*HRPLRLVRHFIFFPDGKNFEIIFELV 62
K+ D F +FSG Q++ PL+L+ I FPD + + EL+
Sbjct: 576 KNGDPSTTRFSWPIFSGN-SSQYVSLDVPLKLLEGEIHFPDAQFWNTEAELI 626
>Z93778-6|CAB07843.2| 554|Caenorhabditis elegans Hypothetical
protein C31H5.3 protein.
Length = 554
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 183 LICSLALLSHSI*ADIG-RFGLSVILFFFL 97
LI SLALLS ++ AD G + L V +F L
Sbjct: 242 LISSLALLSFTLPADCGEKLNLGVTIFMSL 271
>Z81573-3|CAB04624.3| 398|Caenorhabditis elegans Hypothetical
protein M02G9.2 protein.
Length = 398
Score = 25.0 bits (52), Expect = 7.3
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 117 RTSRSGLCQPICCGSTVPENRSSLN 191
RTS S C +C S VP N N
Sbjct: 220 RTSCSSACLSVCASSGVPGNECQSN 244
>AY523514-1|AAR98636.1| 554|Caenorhabditis elegans acetylcholine
receptor (63.2 kD)(acr-19) protein.
Length = 554
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 183 LICSLALLSHSI*ADIG-RFGLSVILFFFL 97
LI SLALLS ++ AD G + L V +F L
Sbjct: 242 LISSLALLSFTLPADCGEKLNLGVTIFMSL 271
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,549,205
Number of Sequences: 27780
Number of extensions: 97635
Number of successful extensions: 265
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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