Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_G04
(354 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 82 1e-16
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 82 1e-16
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 81 2e-16
02_01_0455 + 3266123-3266258,3266348-3266670,3267083-3267661,326... 30 0.60
11_01_0807 - 7178278-7178548,7178629-7178756,7178847-7179815,718... 29 1.4
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10... 28 2.4
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 28 2.4
09_03_0038 + 11790075-11790302,11790397-11790542,11790915-117910... 27 3.2
04_03_0181 - 12327281-12328620,12330922-12331015,12331079-123311... 27 3.2
01_01_1187 + 9444742-9445317 27 3.2
02_05_0952 + 33022742-33023125 27 4.2
09_02_0568 + 10748227-10748434,10749004-10749398 26 7.4
07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708 26 7.4
07_01_0373 + 2783596-2784933 26 7.4
05_07_0283 - 28937027-28937110,28937211-28937549,28937641-289377... 26 9.8
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 82.2 bits (194), Expect = 1e-16
Identities = 36/47 (76%), Positives = 41/47 (87%)
Frame = +1
Query: 67 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFD 207
VDPF +KDWYD+KAPS+F R VG TLV+RTQGTKIASEGLK RVF+
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFE 67
Score = 62.5 bits (145), Expect = 9e-11
Identities = 32/46 (69%), Positives = 36/46 (78%)
Frame = +2
Query: 209 VSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLR 346
VSLADLQ D D +++RK RL AEDVQG+NVL NF GM TTDKLR
Sbjct: 68 VSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLR 111
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 81.8 bits (193), Expect = 1e-16
Identities = 35/47 (74%), Positives = 41/47 (87%)
Frame = +1
Query: 67 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFD 207
VDPF +KDWYD+KAPS+F R +G TLV+RTQGTKIASEGLK RVF+
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFE 67
Score = 62.5 bits (145), Expect = 9e-11
Identities = 32/46 (69%), Positives = 36/46 (78%)
Frame = +2
Query: 209 VSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLR 346
VSLADLQ D D +++RK RL AEDVQG+NVL NF GM TTDKLR
Sbjct: 68 VSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLR 111
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 81.4 bits (192), Expect = 2e-16
Identities = 34/47 (72%), Positives = 43/47 (91%)
Frame = +1
Query: 67 VDPFTRKDWYDVKAPSMFTKRQVGTTLVNRTQGTKIASEGLKGRVFD 207
VDPF++KDWYD+KAP++F+ R +G TLV+RTQGTKIASEGLK RVF+
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFE 67
Score = 63.3 bits (147), Expect = 5e-11
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +2
Query: 209 VSLADLQADSDAERSFRKFRLIAEDVQGRNVLCNFHGMDLTTDKLR 346
VSLADLQ D D +++RK RL AEDVQGRNVL NF GM TTDKLR
Sbjct: 68 VSLADLQNDED--QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLR 111
>02_01_0455 +
3266123-3266258,3266348-3266670,3267083-3267661,
3267866-3268336
Length = 502
Score = 29.9 bits (64), Expect = 0.60
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +3
Query: 192 GACF*LSPLLISRLIVMRKGLSASSDLSLRMSRDVMFSAISTAWTSPLISSDGW 353
G C SPL IS + ++ + L ++ ++ ++++T WTS + GW
Sbjct: 149 GVCIHASPLYISEMAPAQQRGMLNILFQLMITVGILSASLTTYWTSKIAGGWGW 202
>11_01_0807 -
7178278-7178548,7178629-7178756,7178847-7179815,
7180465-7180518,7180622-7180798,7180913-7181926,
7182038-7182101,7182247-7182563,7182797-7182847
Length = 1014
Score = 28.7 bits (61), Expect = 1.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 92 GTMLKRRPCSPRDKWAPPLSIAP 160
G + R PC PRDK+ P S+ P
Sbjct: 206 GAYIVRLPCGPRDKYLPKESLWP 228
>12_01_0014 +
105422-105520,105598-105725,105939-106101,106198-106310,
106787-106825,107026-107109,107193-107241,107331-107422,
107680-107809,107906-107982,108058-109676,110024-110221,
110287-110825
Length = 1109
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 273 SLRMSRDVMFSAISTAWTSPLISSDG 350
SL S D+ FS I +AW ++SDG
Sbjct: 409 SLESSLDIDFSTIPSAWNDDDVTSDG 434
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 273 SLRMSRDVMFSAISTAWTSPLISSDG 350
SL S D+ FS I +AW ++SDG
Sbjct: 466 SLESSLDIDFSTIPSAWNDDDVTSDG 491
>09_03_0038 +
11790075-11790302,11790397-11790542,11790915-11791017,
11791148-11791334,11791466-11791559,11791702-11791855,
11792189-11792305,11792695-11792808,11793629-11793811,
11794209-11794494,11794592-11794713,11794746-11794802,
11794803-11794900,11795036-11795213,11795355-11795455,
11795530-11795629,11795751-11795828,11796785-11796862,
11796956-11797138
Length = 868
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +2
Query: 137 APPLSIAPREQKLHLRV*RGVFLIVSLADLQADSDAERSFRKFRLIAED 283
A L P++ + HL L+V+L L D FR+F++ +D
Sbjct: 629 AKKLGWDPKDGESHLNAMLRPMLLVALVQLGHDKTINEGFRRFQIFFDD 677
>04_03_0181 -
12327281-12328620,12330922-12331015,12331079-12331183,
12331404-12332592,12333268-12333461
Length = 973
Score = 27.5 bits (58), Expect = 3.2
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -3
Query: 346 SELISGEVHAVEIAENITSLDILSDKSELAER 251
+EL +G A +IA+NIT + D+S+LAE+
Sbjct: 390 NELHNGGQGADDIAKNITGIVKADDQSQLAEK 421
>01_01_1187 + 9444742-9445317
Length = 191
Score = 27.5 bits (58), Expect = 3.2
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -3
Query: 289 LDILSDKSELAERPFRITISLEISKGDNQKHAPLDPQMQFLFPGCD 152
LDIL DK A I +S++ G+ +PL+ Q L+P D
Sbjct: 132 LDILQDKWSSAYDVRTILLSIQSLLGEPNNDSPLNTQAAALWPNQD 177
>02_05_0952 + 33022742-33023125
Length = 127
Score = 27.1 bits (57), Expect = 4.2
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -1
Query: 207 IKNTPL*TLRCNFCSLGAIDKGGAHLSLGEH-GRR 106
I+ P T RC +G + KG HLS+ GRR
Sbjct: 56 IERGPQLTCRCRRRFMGGVGKGAPHLSMARRKGRR 90
>09_02_0568 + 10748227-10748434,10749004-10749398
Length = 200
Score = 26.2 bits (55), Expect = 7.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 95 TMLKRRPCSPRDKWAPPLSIAPREQK 172
T+ KR+P RDK P++ AP +K
Sbjct: 163 TVAKRKPLQGRDKVGIPITPAPSNEK 188
>07_03_1037 - 23438205-23441219,23443509-23444513,23444627-23446708
Length = 2033
Score = 26.2 bits (55), Expect = 7.4
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = -3
Query: 283 ILSDKSELAERPFRIT-ISLEIS--KGDNQKHAPLDPQMQF 170
+L+ SELA+ +R+ + E+S KGD ++ A DP + F
Sbjct: 1053 VLTSASELADNAYRVKRVKRELSFEKGDWRQDAGTDPLVPF 1093
>07_01_0373 + 2783596-2784933
Length = 445
Score = 26.2 bits (55), Expect = 7.4
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = -2
Query: 242 HHYQPGDQQGRQSKTRPFRPSDAIFVPWVRLTRVVPTCLLVNMDGALTSYQSLR 81
HH+ QQ +Q R P DA +P++ PT AL + R
Sbjct: 382 HHHHHQQQQQQQQLQRLSAPLDAPNIPFLFSPAAAPTAADTQFAAALQLWDGFR 435
>05_07_0283 -
28937027-28937110,28937211-28937549,28937641-28937754,
28937843-28937955,28939050-28939087,28939315-28939478,
28939746-28939794,28940986-28941152
Length = 355
Score = 25.8 bits (54), Expect = 9.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 139 TTLVNRTQGTKIASEGLKGRVFDCL 213
TT+VN + K+A EG+KG + L
Sbjct: 17 TTIVNLAEEAKLAREGVKGPGYQVL 41
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,781,609
Number of Sequences: 37544
Number of extensions: 195762
Number of successful extensions: 507
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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