Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G04
         (354 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   3.3  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   3.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   4.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   9.9  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    20   9.9  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 233 DSDAERSFRKFRLIAEDVQGRNVLCN 310
           D  +++  R++RL AED+     + N
Sbjct: 167 DLTSDKLLRQYRLRAEDINMNTFIAN 192


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 186 SKGACF*LSPLLISRLIVMRKGLSASSDLSLRMSRDVMFSAISTA 320
           S GA    S  LI+ LIV+      ++D+SL  + D M   I T+
Sbjct: 435 SIGAASIPSAALITMLIVLTALGLPTNDISLLFAVDWMLDRIRTS 479


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 114 HVHQETSGHHPCQSHP 161
           H HQ    HHP Q HP
Sbjct: 317 HPHQ----HHPSQYHP 328


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 247 FRITISLEISKGDNQKHAPLDPQM 176
           + I ISL +S   N K  PLD Q+
Sbjct: 150 YSIRISLTLSCPMNLKLYPLDRQV 173


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 247 FRITISLEISKGDNQKHAPLDPQM 176
           + I ISL +S   N K  PLD Q+
Sbjct: 150 YSIRISLTLSCPMNLKLYPLDRQV 173


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,268
Number of Sequences: 438
Number of extensions: 1867
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)