Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_G03
(347 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.21
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 26 1.5
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 26 1.5
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 1.9
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 26 1.9
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S... 25 2.5
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 4.4
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 24 5.9
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 24 5.9
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 24 7.8
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 24 7.8
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 29.1 bits (62), Expect = 0.21
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Frame = -3
Query: 243 IFISFDTANLSVNLRAFS-LRHNDVSFSIHSDTAPTKFSAIPYSFT-GLHFTVAKTATKA 70
+F S N NL FS H+ F H DT PT S P + F +++
Sbjct: 40 VFPSIPLINTHSNLCLFSNFSHSCFLFCTHPDTLPTSLSINPKKLSLSFSFPLSQKRPFP 99
Query: 69 SFFHIF 52
+F H F
Sbjct: 100 NFLHPF 105
>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 248
Score = 26.2 bits (55), Expect = 1.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 21 DEVRVVNKNIKKCGRNWLWS 80
DEV+ + +K GR W WS
Sbjct: 104 DEVQKPSMTVKAIGRQWFWS 123
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 26.2 bits (55), Expect = 1.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -1
Query: 344 RQVGVPWSWVLQLKVRS 294
R+ G+ WSW+LQL R+
Sbjct: 173 REHGISWSWLLQLIART 189
>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 608
Score = 25.8 bits (54), Expect = 1.9
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 134 FPRYRIPLPGCTSLLPKRRPKPVSSTFFNIFIHNSYF 24
+P + +P S LP+ + VSS+F + HN F
Sbjct: 164 YPAKSLAIPKARSSLPENSSEQVSSSFNSRVAHNRNF 200
>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 1.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 128 RYRIPLPGCTSLLPKRRP 75
R+ +PL TSLLPK+ P
Sbjct: 310 RFELPLKNITSLLPKQDP 327
>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 2.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 225 TANLSVNLRAFSLRHNDVSFSIHSDTAPTKFSAIPYS 115
T LS + R +R ++ S HSDT T +P+S
Sbjct: 214 TCLLSCSSRNGEIRILKIAISSHSDTFDTAMQELPFS 250
>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 501
Score = 24.6 bits (51), Expect = 4.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 149 VSECIEKDTSLCLKEKALKFTERLAVSKDMNI 244
V E + S LKE++LK++ RL S D +
Sbjct: 141 VIEALGNWGSESLKERSLKYSNRLQASNDTGV 172
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 24.2 bits (50), Expect = 5.9
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 143 GAVSEC-IEKDTSLCLKEKALKFTERLAVSKDM 238
G S C +EK CLK++ F R+ ++K++
Sbjct: 493 GVWSSCSLEKAWDECLKKREAMFLSRVGLAKEL 525
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 24.2 bits (50), Expect = 5.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 85 FGNSEVQPGKGIRYRGKFS 141
FG S +QP K +R+ +F+
Sbjct: 387 FGKSRLQPSKSMRFNPRFT 405
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 23.8 bits (49), Expect = 7.8
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -3
Query: 270 VLIKDMPSKIFISFDTANLSVNLRAFSLRHNDVSFSIHSDTAPTKFSAIPYSFTGLHFTV 91
+L+K+M I ++F L A + H+ +HSD P F + + + F +
Sbjct: 405 LLMKNMKKPINLNFIRMYWEQMLEAVQVVHDQNI--VHSDLKPANFLLVEGNLKLIDFGI 462
Query: 90 AK 85
AK
Sbjct: 463 AK 464
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 23.8 bits (49), Expect = 7.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3
Query: 33 VVNKNIKKCGRNWLWSPFWQQ 95
+V K K C W S FW+Q
Sbjct: 39 IVEKYAKNCNTIWDSSKFWKQ 59
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,463,714
Number of Sequences: 5004
Number of extensions: 29423
Number of successful extensions: 87
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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