Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G02
         (192 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    23   5.6  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    23   7.4  
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    23   7.4  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    23   7.4  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    23   7.4  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    23   7.4  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    23   7.4  
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom...    22   9.8  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    22   9.8  

>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 81   HSSHRYSETMYKAIIYYSSNIKYKQYAPFVY 173
            H  +  S T+Y  + + SSN  +K  +  VY
Sbjct: 1199 HMLNFISSTLYLKVSFCSSNFLFKTISVLVY 1229


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 96  YSETMYKAIIYYSSNI 143
           YS   YKA++Y+ S +
Sbjct: 428 YSREFYKAVLYFVSEV 443


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +1

Query: 85  VPIAIQKQCTKLLFIIVVISNINNMHPSFTAK 180
           VP+A   Q   L+ +   +S    +HP +  K
Sbjct: 440 VPLAALHQAGSLVTLTAALSLAQRLHPEYALK 471


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 105 TMYKAIIYYSSNIKYKQYAPFVY 173
           TMY  I+Y+ S++K    + F++
Sbjct: 523 TMYDIIVYFLSDLKRNARSFFIF 545


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 79  DTVPIAIQKQCTKLLFII 132
           D + +AI+K C ++LF I
Sbjct: 242 DNIDVAIKKLCIRILFNI 259


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 102 ETMYKAIIYYSSNIKYKQYAPF 167
           ETMYK IIY S  I      P+
Sbjct: 161 ETMYKFIIYLSKAILQPSRRPW 182


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +1

Query: 160 HPSFTAKPCL 189
           +P+FTA+PCL
Sbjct: 557 YPTFTAQPCL 566


>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 158

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 81  HSSHRYSETMYKAIIYYSSNIKYKQYAPFVY 173
           H  +   +  YK   YY +N+ Y Q  P+ Y
Sbjct: 9   HILNSPQQLQYKMAFYYKNNLGY-QNIPYGY 38


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +3

Query: 84  SSHRYSETMYKAIIYYSSNIKYKQYAPFVYC 176
           +S+ Y E+MY  +   S  +  K +    YC
Sbjct: 125 TSYTYPESMYGGLYCNSDGVAVKPFPSKDYC 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 633,702
Number of Sequences: 5004
Number of extensions: 8109
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 42946120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)