Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G02
         (192 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93383-7|CAB07621.1|  285|Caenorhabditis elegans Hypothetical pr...    30   0.20 
Z93383-8|CAB07629.1|  286|Caenorhabditis elegans Hypothetical pr...    26   3.2  
U23511-7|AAC46795.1|  435|Caenorhabditis elegans Hypothetical pr...    25   7.4  

>Z93383-7|CAB07621.1|  285|Caenorhabditis elegans Hypothetical
           protein F54B8.8 protein.
          Length = 285

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 87  SHRYSETMYKAIIYYSSNIKYKQYAPFVYCK 179
           +HR+  + Y  +I+ SS +   QY  FVYCK
Sbjct: 122 NHRHKLSNYIFLIFISSVVILDQYVLFVYCK 152


>Z93383-8|CAB07629.1|  286|Caenorhabditis elegans Hypothetical
           protein F54B8.9 protein.
          Length = 286

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 81  HSSHRYSETMYKAIIYYSSNIKYKQYAPFVYCKALFE 191
           + +HRY  + Y  ++    +  + QY  F YCK + +
Sbjct: 116 YHNHRYKISTYHILLIVFCSAFFDQYILFGYCKNVID 152


>U23511-7|AAC46795.1|  435|Caenorhabditis elegans Hypothetical
           protein C32D5.7 protein.
          Length = 435

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 146 FDITTIINNSFVHCF 102
           F +TT+I + +VHCF
Sbjct: 309 FPLTTVIYHPYVHCF 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,427,605
Number of Sequences: 27780
Number of extensions: 43901
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 12,740,198
effective HSP length: 43
effective length of database: 11,545,658
effective search space used: 230913160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)