Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G02
         (192 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    21   1.8  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   1.8  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          19   5.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           19   7.1  

>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 75  DRHSSHRYSETMYKAIIYYSSNIKYKQY 158
           +R S  RYS +  +    Y +  KY++Y
Sbjct: 32  ERTSRKRYSRSREREQKSYKNERKYRKY 59


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 75  DRHSSHRYSETMYKAIIYYSSNIKYKQY 158
           +R S  RYS +  +    Y +  KY++Y
Sbjct: 32  ERTSRKRYSRSREREQKSYKNERKYRKY 59


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 149 IFDITTIINN 120
           IFD  TI+NN
Sbjct: 237 IFDNATIVNN 246


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 18.6 bits (36), Expect = 7.1
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -2

Query: 155 LFIFDITT 132
           +FIFD+TT
Sbjct: 281 IFIFDLTT 288


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,640
Number of Sequences: 438
Number of extensions: 644
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 43
effective length of database: 127,509
effective search space used:  2550180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)