Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G01
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...    79   2e-16
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...    79   2e-16
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    27   0.64 
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar...    27   1.1  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   2.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   3.4  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    25   3.4  
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo...    25   4.5  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   4.5  
SPAC13G7.06 |met16||phosphoadenosine phosphosulfate reductase|Sc...    25   4.5  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    24   6.0  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   6.0  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    24   7.9  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 79.4 bits (187), Expect = 2e-16
 Identities = 36/52 (69%), Positives = 42/52 (80%)
 Frame = +3

Query: 33  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGN 188
           MGI+RD  HKR ATG KRA  RKKRK+ELGR  +NT++GP+RIH VR RGGN
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGN 52



 Score = 79.0 bits (186), Expect = 2e-16
 Identities = 36/52 (69%), Positives = 44/52 (84%)
 Frame = +1

Query: 196 YRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 351
           +RALRLD+GNF+WGSE  ++KTRII V Y+ SNNELVRT TL K+AIV +DA
Sbjct: 55  FRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDA 106


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 79.4 bits (187), Expect = 2e-16
 Identities = 36/52 (69%), Positives = 42/52 (80%)
 Frame = +3

Query: 33  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGN 188
           MGI+RD  HKR ATG KRA  RKKRK+ELGR  +NT++GP+RIH VR RGGN
Sbjct: 1   MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGN 52



 Score = 79.0 bits (186), Expect = 2e-16
 Identities = 36/52 (69%), Positives = 44/52 (84%)
 Frame = +1

Query: 196 YRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 351
           +RALRLD+GNF+WGSE  ++KTRII V Y+ SNNELVRT TL K+AIV +DA
Sbjct: 55  FRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDA 106


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 27.5 bits (58), Expect = 0.64
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 135 WQPGDLTHTSSSYEWAHVC 79
           W PG      SS++W HVC
Sbjct: 278 WSPGKYDVFGSSHQWFHVC 296


>SPAC16E8.17c |||succinate-CoA ligase alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 331

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +1

Query: 16  FLTQPRWVSVVIIGIRGGLRAANVRPFVRRGSMS*VARLPTLSLVPNAS 162
           FL  P    +++IG  GG    +   F+R  + S     P +S +  A+
Sbjct: 228 FLDDPNTQGIILIGEIGGSAEEDAAEFIRAANASRSTPKPVVSFIAGAT 276


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +3

Query: 18  SDPAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAAN 137
           S+  K G  +     RRA     A  RKK K + GRP +N
Sbjct: 2   SETTKSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRPCSN 41


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 83   FAARSPPLMPMITTDTHLGWVRKEK 9
            F+ +   L+P+ITT THL  V  +K
Sbjct: 1201 FSEKYTQLIPVITTYTHLSEVENKK 1225


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 48  DHWHKRRATGGKRAPIRKKRKYE 116
           D W   +A G   +PIR+ ++Y+
Sbjct: 758 DEWKASKAFGANDSPIRENKRYK 780


>SPBC530.01 |gyp1||GTPase activating protein Gyp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +3

Query: 18  SDPAK-MGISRDHWHKRRATGGKRAPIR 98
           SDP   +  SR H H+ R+T  K  P R
Sbjct: 26  SDPVTVLDRSRTHHHRGRSTSSKAQPFR 53


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 226 SFQYQDAGHDIIVL 185
           SF YQ  GHD+I L
Sbjct: 44  SFMYQSVGHDVIPL 57


>SPAC13G7.06 |met16||phosphoadenosine phosphosulfate
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 266

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
 Frame = -3

Query: 187 LPPRDLTKWMRWG-PSL 140
           L P+D+ KW RW  PSL
Sbjct: 32  LSPQDILKWCRWTLPSL 48


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -2

Query: 293 LEAL*TTSIIRVLRVEHSDPHAKFPVSRR 207
           LE + T S  +V R  H DP  K P  RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 339 DNSILYQGLGTHQFIVRGIINNI 271
           +NS+ +Q   +H FI R +IN I
Sbjct: 541 ENSLYHQSFSSHWFISRLLINPI 563


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 196  YRALRLDTGNFAWGSECSTRKTRI 267
            YRA+ LDTG+     E +  K RI
Sbjct: 1135 YRAVNLDTGDLMAVKEVALHKPRI 1158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,569,244
Number of Sequences: 5004
Number of extensions: 30848
Number of successful extensions: 70
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)