Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_G01
(351 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 93 7e-20
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 93 7e-20
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 29 1.4
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 29 1.4
11_06_0746 + 26863538-26863716,26863881-26864168,26864268-26864580 28 1.8
08_02_1139 - 24638824-24639325,24639528-24639713,24639801-246405... 27 3.1
05_03_0211 + 10236867-10237075,10238036-10238270,10238433-102386... 27 3.1
04_04_1217 + 31820734-31820841,31820929-31821078,31821183-318212... 27 3.1
06_01_0913 - 7042230-7043332,7043420-7043621 27 4.1
04_04_1534 + 34200538-34200589,34200677-34200857,34201701-342018... 27 4.1
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 26 7.2
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 92.7 bits (220), Expect = 7e-20
Identities = 43/52 (82%), Positives = 49/52 (94%)
Frame = +1
Query: 196 YRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 351
+RALRLDTGN++WGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA
Sbjct: 56 WRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDA 107
Score = 71.7 bits (168), Expect = 1e-13
Identities = 36/53 (67%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Frame = +3
Query: 33 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGN 188
MGISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RGGN
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGN 53
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 92.7 bits (220), Expect = 7e-20
Identities = 43/52 (82%), Positives = 49/52 (94%)
Frame = +1
Query: 196 YRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 351
+RALRLDTGN++WGSE TRKTRI+DVVYNASNNELVRT+TLVK+AIV VDA
Sbjct: 56 WRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDA 107
Score = 71.7 bits (168), Expect = 1e-13
Identities = 36/53 (67%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Frame = +3
Query: 33 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQR-IHLVRSRGGN 188
MGISRD HKRRATGGK+ RKKRKYELGR ANTKL + + VR RGGN
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGN 53
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 28.7 bits (61), Expect = 1.4
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +3
Query: 60 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGG 185
KRR GG+RA R+K + E GR A + R RGG
Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGG 86
Score = 27.5 bits (58), Expect = 3.1
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 60 KRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGG 185
+RR GG+RA R+K + E GR A + R RGG
Sbjct: 9 RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGG 50
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 60 KRRATGGKRAPIRKKRKYELGRPAA 134
KRR GG+RA R+K + E GR A
Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKA 105
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 28.7 bits (61), Expect = 1.4
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 135 WQPGDLTHTSSSYEWAHVCRP*PSSYANDHD 43
W+ GD+ HT ++ W+ C +YA HD
Sbjct: 570 WKMGDIVHTLTNRRWSEKC----VTYAESHD 596
>11_06_0746 + 26863538-26863716,26863881-26864168,26864268-26864580
Length = 259
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -3
Query: 235 PMRSFQYQDAGHDIIVLPPRDLTKWMRWGPSLVLAAGRPNSYF 107
P +S Q + + D V PP D W R+G + A P Y+
Sbjct: 119 PTKSMQVRASSKD--VGPPDDGYSWKRYGQKNIFGANYPRCYY 159
>08_02_1139 -
24638824-24639325,24639528-24639713,24639801-24640543,
24640709-24640870,24641141-24641500
Length = 650
Score = 27.5 bits (58), Expect = 3.1
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -3
Query: 214 QDAGHDIIVLPPRDLTKWMRWGPSLVLAAGRPNSYF 107
++ D+I+ P D W ++G V + P SY+
Sbjct: 241 EEYSSDLIITPAEDGYNWRKYGQKQVKNSEHPRSYY 276
>05_03_0211 +
10236867-10237075,10238036-10238270,10238433-10238602,
10240324-10240466,10240590-10240767,10241441-10242008,
10243001-10243113,10244521-10244764,10245201-10245278,
10246500-10246727
Length = 721
Score = 27.5 bits (58), Expect = 3.1
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Frame = +2
Query: 209 VLILETSHGDLNVQPARLVLLMLFIMPLTMNWCVPR-----PW*RMLLSWW 346
+L L L + P RL++LM+F+ T N PR W R L WW
Sbjct: 652 ILALVVMALSLAIVPTRLLVLMMFLEVFT-NHSPPRRASTERWTRRLREWW 701
>04_04_1217 +
31820734-31820841,31820929-31821078,31821183-31821281,
31821398-31821490,31821585-31821851
Length = 238
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 65 PLMPMITTDTHLGWVRKEKPR 3
P++PM+ T THL W RK R
Sbjct: 162 PIVPMVVTGTHLAW-RKNSLR 181
>06_01_0913 - 7042230-7043332,7043420-7043621
Length = 434
Score = 27.1 bits (57), Expect = 4.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 184 PPRDLTKWMRWGPSLVLAAGRPNSY 110
P +T + W P L +AAGRP ++
Sbjct: 191 PTHGVTVSVYWAPFLAMAAGRPENF 215
>04_04_1534 +
34200538-34200589,34200677-34200857,34201701-34201842,
34201963-34202032,34202169-34202302
Length = 192
Score = 27.1 bits (57), Expect = 4.1
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -3
Query: 175 DLTKWMRWGPSLVLAAGRPNSYFLFLRMGARLPPV---ALLL 59
DL W R S AG +FLF R G P V ALLL
Sbjct: 20 DLVLWRRRNVSAAAVAGATAVWFLFERAGYSFPSVMANALLL 61
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 224 TSHGDLNVQPARLVLLMLFIMPLTMNWCVPRP 319
TSHG+ + +P+ L L+ F++P + N + P
Sbjct: 2527 TSHGNQHQRPSILASLLPFVLPSSSNPSLTAP 2558
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,109,308
Number of Sequences: 37544
Number of extensions: 236048
Number of successful extensions: 570
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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