Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_G01
         (351 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X67247-1|CAA47670.1|  208|Homo sapiens ribosomal protein S8 prot...   100   1e-21
BC070875-1|AAH70875.1|  208|Homo sapiens ribosomal protein S8 pr...   100   1e-21
AL592166-7|CAI13003.1|  208|Homo sapiens ribosomal protein S8 pr...   100   1e-21
AB062401-1|BAB93488.1|  208|Homo sapiens ribosomal protein S8 pr...   100   1e-21
AL592166-8|CAI13002.1|  188|Homo sapiens ribosomal protein S8 pr...    97   1e-20

>X67247-1|CAA47670.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  100 bits (239), Expect = 1e-21
 Identities = 45/52 (86%), Positives = 49/52 (94%)
 Frame = +1

Query: 196 YRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 351
           YRALRLD GNF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+
Sbjct: 55  YRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDS 106



 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 43/52 (82%), Positives = 46/52 (88%)
 Frame = +3

Query: 33  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGN 188
           MGISRD+WHKRR TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGN 52


>BC070875-1|AAH70875.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  100 bits (239), Expect = 1e-21
 Identities = 45/52 (86%), Positives = 49/52 (94%)
 Frame = +1

Query: 196 YRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 351
           YRALRLD GNF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+
Sbjct: 55  YRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDS 106



 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 43/52 (82%), Positives = 46/52 (88%)
 Frame = +3

Query: 33  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGN 188
           MGISRD+WHKRR TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGN 52


>AL592166-7|CAI13003.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  100 bits (239), Expect = 1e-21
 Identities = 45/52 (86%), Positives = 49/52 (94%)
 Frame = +1

Query: 196 YRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 351
           YRALRLD GNF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+
Sbjct: 55  YRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDS 106



 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 43/52 (82%), Positives = 46/52 (88%)
 Frame = +3

Query: 33  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGN 188
           MGISRD+WHKRR TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGN 52


>AB062401-1|BAB93488.1|  208|Homo sapiens ribosomal protein S8
           protein.
          Length = 208

 Score =  100 bits (239), Expect = 1e-21
 Identities = 45/52 (86%), Positives = 49/52 (94%)
 Frame = +1

Query: 196 YRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 351
           YRALRLD GNF+WGSEC TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+
Sbjct: 55  YRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDS 106



 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 43/52 (82%), Positives = 46/52 (88%)
 Frame = +3

Query: 33  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGN 188
           MGISRD+WHKRR TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGGN
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGN 52


>AL592166-8|CAI13002.1|  188|Homo sapiens ribosomal protein S8
           protein.
          Length = 188

 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 43/53 (81%), Positives = 46/53 (86%)
 Frame = +3

Query: 33  MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNT 191
           MGISRD+WHKRR TGGKR P  KKRKYELGRPAANTK+GP+RIH VR RGG T
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGCT 53



 Score = 64.9 bits (151), Expect = 7e-11
 Identities = 30/34 (88%), Positives = 33/34 (97%)
 Frame = +1

Query: 250 TRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 351
           TRKTRIIDVVYNASNNELVRTKTLVKN IV++D+
Sbjct: 53  TRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDS 86


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,765,223
Number of Sequences: 237096
Number of extensions: 1304161
Number of successful extensions: 2181
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2181
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 2084089752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)