Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_G01
(351 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 89 8e-19
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 33 0.076
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.076
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.076
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 33 0.076
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 33 0.076
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 33 0.076
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 30 0.41
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 30 0.41
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 30 0.41
U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal prote... 28 1.6
U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal prote... 28 1.6
U20861-9|AAN84854.1| 192|Caenorhabditis elegans Hypothetical pr... 27 2.9
AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical ... 27 2.9
AC006795-3|AAF59494.1| 369|Caenorhabditis elegans Hypothetical ... 27 2.9
U64844-14|AAO25986.1| 375|Caenorhabditis elegans Hypothetical p... 26 6.6
U64844-13|AAD56301.1| 453|Caenorhabditis elegans Hypothetical p... 26 6.6
Z81457-5|CAB03817.2| 584|Caenorhabditis elegans Hypothetical pr... 26 8.7
AC024801-12|AAF59643.4| 569|Caenorhabditis elegans Hypothetical... 26 8.7
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 89.0 bits (211), Expect = 8e-19
Identities = 40/52 (76%), Positives = 47/52 (90%)
Frame = +1
Query: 196 YRALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELVRTKTLVKNAIVVVDA 351
YRALRLD+GNF+W SE +TRKTRI+D +YNA+NNELVRTKTLVK AI+ VDA
Sbjct: 55 YRALRLDSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDA 106
Score = 79.0 bits (186), Expect = 9e-16
Identities = 35/52 (67%), Positives = 40/52 (76%)
Frame = +3
Query: 33 MGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGN 188
MGISRD WHKR TG + KKRK+ELGRPAANTK+G R+ LVR+RGGN
Sbjct: 1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGN 52
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 32.7 bits (71), Expect = 0.076
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 202 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 306
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.076
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 202 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 306
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.076
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 202 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 306
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.076
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 202 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 306
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 32.7 bits (71), Expect = 0.076
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 202 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 306
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 32.7 bits (71), Expect = 0.076
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +1
Query: 202 ALRLDTGNFAWGSECSTRKTRIIDVVYNASNNELV 306
A+++D G+FAWGS+ RK + D+ +N +LV
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFNIKRGQLV 645
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 30.3 bits (65), Expect = 0.41
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 154 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 29
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 424
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 30.3 bits (65), Expect = 0.41
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 154 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 29
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 383 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 424
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 30.3 bits (65), Expect = 0.41
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 154 WGPSLVLAAGRPNSYFLFLRMGARLPPVALLLCQ*SRLIPIL 29
W S V +GRPN +++G P A+L C S++I ++
Sbjct: 292 WAISNVTISGRPNQVEQMVKLGVLRPFCAMLSCTDSQIIQVV 333
>U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform b protein.
Length = 88
Score = 28.3 bits (60), Expect = 1.6
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +3
Query: 45 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRSRGGNTMISCPAS*Y- 218
R HWHKR T + P RK R+ + R A ++ P+ + L+RS ++ CP Y
Sbjct: 15 RKHWHKRIKTWFDQ-PARKLRRRQ-NRQAKAVEIAPRPVAGLLRS-----VVRCPQKRYN 67
Query: 219 WKLRMG 236
K R+G
Sbjct: 68 TKTRLG 73
>U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform a protein.
Length = 207
Score = 28.3 bits (60), Expect = 1.6
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +3
Query: 45 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRI-HLVRSRGGNTMISCPAS*Y- 218
R HWHKR T + P RK R+ + R A ++ P+ + L+RS ++ CP Y
Sbjct: 15 RKHWHKRIKTWFDQ-PARKLRRRQ-NRQAKAVEIAPRPVAGLLRS-----VVRCPQKRYN 67
Query: 219 WKLRMG 236
K R+G
Sbjct: 68 TKTRLG 73
>U20861-9|AAN84854.1| 192|Caenorhabditis elegans Hypothetical
protein C28H8.9b protein.
Length = 192
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = +3
Query: 24 PAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTK 143
P + G D W R+ G P++K A NTK
Sbjct: 149 PDEFGSDEDDWSSRKRRKGNLGPVQKATSSRKKNAARNTK 188
>AL032651-1|CAB60580.1| 681|Caenorhabditis elegans Hypothetical
protein Y6D1A.1 protein.
Length = 681
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/53 (24%), Positives = 23/53 (43%)
Frame = +3
Query: 45 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRGGNTMISC 203
R+ G +R+P R +R+ + P N + P+R + RS + C
Sbjct: 55 RERMENLTLEGKRRSPPRVRREPPMRSPGRNEVMSPERRYGTRSASSRSQNEC 107
>AC006795-3|AAF59494.1| 369|Caenorhabditis elegans Hypothetical
protein Y50D4B.5 protein.
Length = 369
Score = 27.5 bits (58), Expect = 2.9
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -1
Query: 39 YPSWLGQKRKASC 1
Y +WLG KRKASC
Sbjct: 268 YTAWLGGKRKASC 280
>U64844-14|AAO25986.1| 375|Caenorhabditis elegans Hypothetical
protein T22F3.11b protein.
Length = 375
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 166 KWMRWGPSLVLAAGRPNSYFLFLRMGARLP 77
KW+ W +L G L+++ GARLP
Sbjct: 65 KWILWAVALGTMLGTVPINMLYVKYGARLP 94
>U64844-13|AAD56301.1| 453|Caenorhabditis elegans Hypothetical
protein T22F3.11a protein.
Length = 453
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 166 KWMRWGPSLVLAAGRPNSYFLFLRMGARLP 77
KW+ W +L G L+++ GARLP
Sbjct: 65 KWILWAVALGTMLGTVPINMLYVKYGARLP 94
>Z81457-5|CAB03817.2| 584|Caenorhabditis elegans Hypothetical
protein C01G12.7 protein.
Length = 584
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -2
Query: 278 TTSIIRVLRVEHSDPHAK----FPVSRRRARYHSVTTTGSD 168
T + V+RV+ +D A+ + VSRRR YH + G +
Sbjct: 491 TPKLPNVIRVQSADHVARSTVDYDVSRRRMSYHDMPQVGDN 531
>AC024801-12|AAF59643.4| 569|Caenorhabditis elegans Hypothetical
protein Y50D7A.8 protein.
Length = 569
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +3
Query: 18 SDPAKMGISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTKLGPQRIHLVRSRG 182
++ A++ R +R++ KRA +K RK E +P G HL+ S G
Sbjct: 257 AESARLRYQRMTPDERKSYNMKRAAAKKTRKEEEEKPDDMEHYGDNEEHLMDSSG 311
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,806,162
Number of Sequences: 27780
Number of extensions: 180440
Number of successful extensions: 471
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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