Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_F23
(454 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz... 50 2e-07
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 29 0.44
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 27 1.8
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 4.1
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 4.1
SPCC1223.02 |nmt1|thi3|no message in thiamine Nmt1|Schizosacchar... 25 4.1
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 25 5.4
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 5.4
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 25 7.2
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 24 9.5
>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
L12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 206
Score = 49.6 bits (113), Expect = 2e-07
Identities = 29/86 (33%), Positives = 48/86 (55%)
Frame = +3
Query: 195 KIYKIVSEITNLNLLEVSELSQVLKKRLNLPDTPVMPMGGFAMSPXXXXXXXXXXTPKSV 374
+I ++V +I++L+LLE SEL + LK++LN+ + M A++ K
Sbjct: 76 QIGEMVDKISSLSLLETSELVKQLKEKLNIAEIAPMAAVAPAVASAAPSEEKAPEEKKEE 135
Query: 375 KTSFTVKMTKCDDKQKVALIKEVKSL 452
KT++ +K+ D K +IKEVKSL
Sbjct: 136 KTTWNLKLESFDAGSKAKVIKEVKSL 161
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 28.7 bits (61), Expect = 0.44
Identities = 21/101 (20%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Frame = +3
Query: 168 EGIDKPVSPKIYKIVSEITNLNLLEVSELSQVLKK--------RLNLPDTPVMPMGGFAM 323
E + KP++P++ + SE+ + ++L+ +++ V++K R +P+ ++P +
Sbjct: 224 ENVSKPINPRMERFSSEVKSSSILK-QQIAAVVEKINYDIRPQRDQIPEENIVPRISYLT 282
Query: 324 SPXXXXXXXXXXTPKSVKTSFTVKMTKCDDKQKVALIKEVK 446
S P+S T+ T + + +D Q+ K V+
Sbjct: 283 S--TTTSTKSSPVPESTTTNTTEVLKELNDIQENKSRKNVE 321
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 26.6 bits (56), Expect = 1.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 198 IYKIVSEITNLNLLEVSELSQVLKKRLNLP 287
IY++ +ITNL++L +EL + ++ L P
Sbjct: 203 IYQLYHDITNLDILITNELLRAIESLLRRP 232
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.4 bits (53), Expect = 4.1
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 287 RHTCYANGRLCNVAC 331
RHT ANG +C V C
Sbjct: 111 RHTFTANGSICEVVC 125
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.4 bits (53), Expect = 4.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 195 KIYKIVSEITNLNLLEVSELSQVLKKRLNLPD 290
KIY + + + + V E++ + KKRL+ PD
Sbjct: 1298 KIYSTIDDNLIFSSVFVEEINSISKKRLDEPD 1329
>SPCC1223.02 |nmt1|thi3|no message in thiamine
Nmt1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 346
Score = 25.4 bits (53), Expect = 4.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +2
Query: 311 RLCNVACCCWC 343
RL N+ CCC+C
Sbjct: 188 RLANLGCCCFC 198
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 180 KPVSPKIYKIVSEITNLNLLEVSELSQVLKKRLNL 284
KP + KI + +++++E EL + +KKR N+
Sbjct: 539 KPTTSKITPSIPPAFDIHIIEGEELLEEMKKRENV 573
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.0 bits (52), Expect = 5.4
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = -3
Query: 449 TLDFFDKCHLLFIITLCHFYCE 384
+L +F+K +LF++ L H++ E
Sbjct: 997 SLSYFEKFFVLFVVNLRHYFQE 1018
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 24.6 bits (51), Expect = 7.2
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +2
Query: 5 EENISTNLLVIFISNHEWNQIIQKYFFPVAFILKMCNSSPRGCTSGSTIDNPST 166
+ N++TN+ V EW + +F P LK S G G +++ ST
Sbjct: 415 DNNVTTNVCV----GKEWYRYPSTFFLPDNSRLKFVKSEFDGILPGEFVESNST 464
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 24.2 bits (50), Expect = 9.5
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 186 VSPKIYKIVSEITNLNLLEVSELSQVLKK-RLNLPDTPVMPMGG 314
VS K ++ ++ + SEL VL + R++ P TP+ +GG
Sbjct: 216 VSNKDIDLILIPAHVPVHNASELDIVLSELRIHFPTTPIQVLGG 259
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,767,228
Number of Sequences: 5004
Number of extensions: 32593
Number of successful extensions: 102
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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