Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F23
         (454 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0745 - 5550472-5551053                                           47   8e-06
07_03_1338 - 25877235-25877738                                         42   2e-04
03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187...    29   2.3  
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397...    27   5.3  
02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023     27   5.3  
02_04_0534 + 23725051-23726253                                         27   9.3  

>02_01_0745 - 5550472-5551053
          Length = 193

 Score = 46.8 bits (106), Expect = 8e-06
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
 Frame = +3

Query: 165 PEGIDKPVSPKIYKIVSEITNLNLLEVSELSQVLKKRLNLPDTPVMPMGGFAMSP---XX 335
           P G   P S K+  +   I  L   E+ +++  L  RLN P    +   GF+ SP     
Sbjct: 50  PYGPMSPPSQKVVDLADRIAALPPEEIKQIAPALLLRLNQPPPQAISGQGFSFSPQGGGG 109

Query: 336 XXXXXXXXTPKSVKTSFTVKMTKCDDKQKVALIKEVKS 449
                     K+ KT F VK+ K D   K+ +IKE+++
Sbjct: 110 AAGAAKAEEKKAEKTVFDVKLEKFDAAAKIKIIKEIRT 147


>07_03_1338 - 25877235-25877738
          Length = 167

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
 Frame = +3

Query: 192 PKIYKIVSEITNLNLLEVSELSQVLKKRLNLPDTPVMPMGGFAMSPXXXXXXXXXXTPKS 371
           PK+ +I  ++  L+  E+ + S +L+ +L L  T     G  A               ++
Sbjct: 34  PKLSRIADQLLELSPAELDDYSALLRLKLRLSLTSSAASGAAATGAAGDAASGSAGAEEA 93

Query: 372 --VKTSFTVKMTKCDDKQKVALIKEVKSL 452
             VKTSF VK+ K +   K+ +IKEV+++
Sbjct: 94  AAVKTSFDVKIEKYEAAAKIKIIKEVRAV 122


>03_02_0981 +
           12917195-12917572,12917661-12917818,12918732-12918765,
           12918942-12919074,12919167-12919221,12919281-12920064,
           12920440-12920769,12920788-12920895,12921259-12921678,
           12921775-12921847,12922291-12922376,12922873-12922992,
           12923086-12923156,12923350-12923449
          Length = 949

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 284 ARHTCYANGRLCNVACCCWC*RRRGYT*ICQDQFHS 391
           A  TC+   R+ N  CC  C  RRGY   C  +++S
Sbjct: 147 AAATCHQCRRVANTICCTSC-DRRGYCTNCISRWYS 181


>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
            3973665-3973982,3974565-3974763,3974937-3975202,
            3975288-3975574,3976714-3977818,3977900-3978046,
            3978146-3978226,3978315-3978540,3978622-3978761,
            3979539-3979645,3979739-3979841
          Length = 3638

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 72   KNTSFQWRSFSRCAILRQEVVQAAAPLTIPVPEGIDK 182
            + T   W S S   ++   ++Q A  L I +PEG  K
Sbjct: 1398 EKTDQTWNSISALLLILDNMIQYAPALDIEMPEGTSK 1434


>02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023
          Length = 432

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 156 IPVPEGIDKPVSPK 197
           +P+PEG D PVSPK
Sbjct: 104 LPLPEGSDHPVSPK 117


>02_04_0534 + 23725051-23726253
          Length = 400

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +3

Query: 153 TIPVPEGIDKPVSPK 197
           T+P+PEG D PV PK
Sbjct: 104 TLPLPEGGDHPVPPK 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,841,913
Number of Sequences: 37544
Number of extensions: 193052
Number of successful extensions: 593
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)