Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F23
         (454 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93785-3|CAB07857.1|  173|Caenorhabditis elegans Hypothetical pr...    79   1e-15
Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical pr...    28   2.8  
U23510-13|AAK71392.2|  425|Caenorhabditis elegans Hypothetical p...    28   2.8  
Z82268-2|CAD89737.1|  389|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z82268-1|CAB05197.3|  508|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z49130-1|CAA88965.2|  708|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AF067623-1|AAC17553.2|  640|Caenorhabditis elegans Hypothetical ...    27   4.8  

>Z93785-3|CAB07857.1|  173|Caenorhabditis elegans Hypothetical
           protein W09D10.3 protein.
          Length = 173

 Score = 79.0 bits (186), Expect = 1e-15
 Identities = 41/97 (42%), Positives = 61/97 (62%)
 Frame = +3

Query: 159 PVPEGIDKPVSPKIYKIVSEITNLNLLEVSELSQVLKKRLNLPDTPVMPMGGFAMSPXXX 338
           P+P   D+ +S K+  +V EI NL+LL+VS+L+  LKKRLN+PD P+M     A      
Sbjct: 34  PLPSE-DRAISAKVSSLVEEIANLSLLDVSDLNWALKKRLNIPDQPLMAAAA-AAPAAQA 91

Query: 339 XXXXXXXTPKSVKTSFTVKMTKCDDKQKVALIKEVKS 449
                   P+  K +FTVK+TK DD +K+A+IKE+++
Sbjct: 92  EAEAASDVPQ--KMTFTVKLTKFDDTKKIAIIKEIRN 126


>Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical
           protein F17B5.6 protein.
          Length = 363

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 31  CYLYFKS*MESDYSKILLSSGVHSQDVQFFA 123
           CY  +   +  D SK L+  G+H Q  ++FA
Sbjct: 141 CYYQYTGLLTCDQSKFLVIDGMHFQSYKYFA 171


>U23510-13|AAK71392.2|  425|Caenorhabditis elegans Hypothetical
           protein R12C12.8a protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 17/63 (26%), Positives = 34/63 (53%)
 Frame = +3

Query: 96  SFSRCAILRQEVVQAAAPLTIPVPEGIDKPVSPKIYKIVSEITNLNLLEVSELSQVLKKR 275
           S+SR    ++   ++  P+ +P P    KP+   IY I +E T+L +L+  + + +   R
Sbjct: 136 SYSRIKNYKEAQKKSLIPINVPQP--PSKPIDIAIYMIQTEHTDLWILDDLQSNSIPLLR 193

Query: 276 LNL 284
           L++
Sbjct: 194 LSV 196


>Z82268-2|CAD89737.1|  389|Caenorhabditis elegans Hypothetical
           protein F52B11.1b protein.
          Length = 389

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +3

Query: 195 KIYKIVSEITNLNL---LEVSELSQVLKKRLNLPDTPVMPMGGFAMSPXXXXXXXXXXTP 365
           K+Y++  E+  LN       + LS ++ K+ N+ D+  M +   + S           TP
Sbjct: 291 KMYELCHEMHKLNAHAEWTTNALSIMMHKQPNIIDSEQMSLFNKSQSTSSSASAHGATTP 350

Query: 366 KSVKTSFTVKMTKCDDKQK 422
            S  +S +   +K DD+ +
Sbjct: 351 ISSTSSSSSSSSKNDDEME 369


>Z82268-1|CAB05197.3|  508|Caenorhabditis elegans Hypothetical
           protein F52B11.1a protein.
          Length = 508

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +3

Query: 195 KIYKIVSEITNLNL---LEVSELSQVLKKRLNLPDTPVMPMGGFAMSPXXXXXXXXXXTP 365
           K+Y++  E+  LN       + LS ++ K+ N+ D+  M +   + S           TP
Sbjct: 410 KMYELCHEMHKLNAHAEWTTNALSIMMHKQPNIIDSEQMSLFNKSQSTSSSASAHGATTP 469

Query: 366 KSVKTSFTVKMTKCDDKQK 422
            S  +S +   +K DD+ +
Sbjct: 470 ISSTSSSSSSSSKNDDEME 488


>Z49130-1|CAA88965.2|  708|Caenorhabditis elegans Hypothetical
           protein T06D8.2 protein.
          Length = 708

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
 Frame = +3

Query: 165 PEGIDKPVSPKIYKIVSEITNLNLLEVSELSQVLKKRLNLPDTPVMPMGGFAMSPX--XX 338
           PE  + P  PK+Y+ V E      L +   S +L   L+  +    P   F + P     
Sbjct: 267 PENSELPSKPKLYQPVGEFFQKKSLTLKVNSNILSD-LSPTEVQADPSTAFLLPPRPPSS 325

Query: 339 XXXXXXXTPKSVKTSFTVKMTKCDDKQKVAL 431
                  TPK  +T+ +V   +     +V +
Sbjct: 326 SSSRRTVTPKRPQTNDSVSTRRSSTTWEVPI 356


>AF067623-1|AAC17553.2|  640|Caenorhabditis elegans Hypothetical
           protein T26C12.1 protein.
          Length = 640

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 99  FSRCAILRQEVVQAAAPLTI-PVPEGIDKPVSPKIYKIV 212
           + RC + RQ    A AP TI P+P  I  P S KI +IV
Sbjct: 244 YLRCHVSRQ-FGNAWAPQTITPLPTNIPMPKSEKIQEIV 281


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,840,333
Number of Sequences: 27780
Number of extensions: 186002
Number of successful extensions: 636
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)