Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F22
         (317 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    25   3.7  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    24   6.4  
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub...    23   8.5  

>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 268 CKKVESHILKSHHCFLQ*LPHH 203
           C    SH  KS   FLQ LP+H
Sbjct: 159 CTPYASHAFKSADGFLQSLPYH 180


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -1

Query: 224 FTIATASSKTKSPCKLNTNGKLAKQVTLNSFNIEIFYK 111
           F +ATA  + K     N N  L  ++ +N  +   F K
Sbjct: 267 FRLATAVERLKKVLSANANAPLNVEMIMNDIDASSFIK 304


>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
           subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 490

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 304 LDLSVYSCPRNHCKKVESHILKSH 233
           LD  +  CP +  K  + H+LK H
Sbjct: 42  LDFQLSWCPESERKTTKYHLLKFH 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,236,656
Number of Sequences: 5004
Number of extensions: 21674
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)