Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F22
         (317 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0366 - 28779899-28780543,28780813-28781076,28781165-287814...    27   3.2  
02_02_0300 - 8746526-8747224,8749033-8749089,8749414-8749650,875...    27   4.2  
01_03_0288 - 14714953-14715253,14716317-14716402,14716573-147166...    27   4.2  

>01_06_0366 - 28779899-28780543,28780813-28781076,28781165-28781431,
            28781546-28781774,28781868-28781985,28782229-28782486,
            28782585-28782858,28782950-28783475,28784289-28784527,
            28784626-28784847,28784912-28784914,28785124-28785299,
            28786147-28786201,28786288-28786557
          Length = 1181

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -1

Query: 287  FVPQKSL*KG*IPYSEVTSLFFTIATASSKTKSPCKLNTNGKLAKQVTLNSFNI 126
            +V  K + +G   +S+V  +FF +  A+        L+TN   A+   ++ F+I
Sbjct: 861  YVGAKFVSQGKTTFSDVFKVFFALVLAAVGVSQSSALSTNATKARDSAISIFSI 914


>02_02_0300 -
           8746526-8747224,8749033-8749089,8749414-8749650,
           8750061-8750172,8750258-8750538,8752032-8752244,
           8753105-8753636,8753871-8753899
          Length = 719

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 151 KLRLIALTLRFFTNYFY 101
           KL +IA  LRFFT+ FY
Sbjct: 118 KLEIIASVLRFFTDIFY 134


>01_03_0288 -
           14714953-14715253,14716317-14716402,14716573-14716686,
           14716771-14717140,14717224-14717357,14717512-14717617,
           14717733-14717854,14718125-14718231,14718522-14718622,
           14719007-14719169,14719559-14719614,14720833-14721152
          Length = 659

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 239 LQNMGFNLFTMISGARIYRQ 298
           L    FNL T+I GA +YRQ
Sbjct: 324 LMESSFNLLTVIKGASMYRQ 343


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,646,326
Number of Sequences: 37544
Number of extensions: 100825
Number of successful extensions: 151
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)