Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_F22
(317 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL359085-5|CAI11007.1| 760|Homo sapiens transmembrane and tetra... 51 6e-07
AL359085-3|CAI11005.1| 225|Homo sapiens transmembrane and tetra... 51 6e-07
BC093854-1|AAH93854.1| 836|Homo sapiens transmembrane and tetra... 46 3e-05
BC093852-1|AAH93852.1| 836|Homo sapiens transmembrane and tetra... 46 3e-05
AL359085-2|CAI11004.1| 684|Homo sapiens transmembrane and tetra... 43 2e-04
BX538169-1|CAD98046.1| 914|Homo sapiens hypothetical protein pr... 41 7e-04
BC117177-1|AAI17178.1| 914|Homo sapiens transmembrane and tetra... 41 7e-04
BC117175-1|AAI17176.1| 914|Homo sapiens transmembrane and tetra... 41 7e-04
AJ697717-1|CAG26973.1| 914|Homo sapiens SMILE protein protein. 41 7e-04
AL359085-4|CAI11006.1| 54|Homo sapiens transmembrane and tetra... 30 1.7
BC111530-1|AAI11531.1| 1196|Homo sapiens CMYA5 protein protein. 29 2.3
AL834252-1|CAD38928.2| 1332|Homo sapiens hypothetical protein pr... 29 2.3
AL832368-1|CAD91158.1| 1163|Homo sapiens hypothetical protein pr... 29 2.3
AL831966-1|CAD38607.1| 1470|Homo sapiens hypothetical protein pr... 29 2.3
Y15771-1|CAA75773.1| 122|Homo sapiens immunoglobulin heavy chai... 27 9.1
>AL359085-5|CAI11007.1| 760|Homo sapiens transmembrane and
tetratricopeptide repeat containing 4 protein.
Length = 760
Score = 51.2 bits (117), Expect = 6e-07
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Frame = +1
Query: 139 LSVTCLASLPFVFNLQGDFVFDDAVAIVKNNDVTSEYGI-QPFYNDFWGTNIPTSLSHKS 315
L V +A + F + GDFVFDD+ AIV N D+ +E + +++DFWG+ + ++ SHKS
Sbjct: 43 LVVGSVAIVCFARSYDGDFVFDDSEAIVNNKDLQAETPLGDLWHHDFWGSRLSSNTSHKS 102
>AL359085-3|CAI11005.1| 225|Homo sapiens transmembrane and
tetratricopeptide repeat containing 4 protein.
Length = 225
Score = 51.2 bits (117), Expect = 6e-07
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Frame = +1
Query: 139 LSVTCLASLPFVFNLQGDFVFDDAVAIVKNNDVTSEYGI-QPFYNDFWGTNIPTSLSHKS 315
L V +A + F + GDFVFDD+ AIV N D+ +E + +++DFWG+ + ++ SHKS
Sbjct: 24 LVVGSVAIVCFARSYDGDFVFDDSEAIVNNKDLQAETPLGDLWHHDFWGSRLSSNTSHKS 83
>BC093854-1|AAH93854.1| 836|Homo sapiens transmembrane and
tetratricopeptide repeat containing 2 protein.
Length = 836
Score = 45.6 bits (103), Expect = 3e-05
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 127 MLKLLSVTCLASLPFVFNLQGDFVFDDAVAIVKNNDVTSEYG-IQPFYNDFWGTNIPTSL 303
M+ L + L ++ L DF +DD+ AI N D+ E FYNDFWGT + S
Sbjct: 1 MIAELVSSALGLALYLNTLSADFCYDDSRAIKTNQDLLPETPWTHIFYNDFWGTLLTHSG 60
Query: 304 SHKS 315
SHKS
Sbjct: 61 SHKS 64
>BC093852-1|AAH93852.1| 836|Homo sapiens transmembrane and
tetratricopeptide repeat containing 2 protein.
Length = 836
Score = 45.6 bits (103), Expect = 3e-05
Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 127 MLKLLSVTCLASLPFVFNLQGDFVFDDAVAIVKNNDVTSEYG-IQPFYNDFWGTNIPTSL 303
M+ L + L ++ L DF +DD+ AI N D+ E FYNDFWGT + S
Sbjct: 1 MIAELVSSALGLALYLNTLSADFCYDDSRAIKTNQDLLPETPWTHIFYNDFWGTLLTHSG 60
Query: 304 SHKS 315
SHKS
Sbjct: 61 SHKS 64
>AL359085-2|CAI11004.1| 684|Homo sapiens transmembrane and
tetratricopeptide repeat containing 4 protein.
Length = 684
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +1
Query: 139 LSVTCLASLPFVFNLQGDFVFDDAVAIVKNNDVTSEYGI-QPFYNDFWGTNI 291
L V +A + F + GDFVFDD+ AIV N D+ +E + +++DFWG+ +
Sbjct: 24 LVVGSVAIVCFARSYDGDFVFDDSEAIVNNKDLQAETPLGDLWHHDFWGSRL 75
>BX538169-1|CAD98046.1| 914|Homo sapiens hypothetical protein
protein.
Length = 914
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 193 FVFDDAVAIVKNNDVTSEYGIQP-FYNDFWGTNIPTSLSHKS 315
FVFDD AI+ N D+ ++ F NDFWGT + SHKS
Sbjct: 28 FVFDDVSAILDNKDLHPSTPLKTLFQNDFWGTPMSEERSHKS 69
>BC117177-1|AAI17178.1| 914|Homo sapiens transmembrane and
tetratricopeptide repeat containing 3 protein.
Length = 914
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 193 FVFDDAVAIVKNNDVTSEYGIQP-FYNDFWGTNIPTSLSHKS 315
FVFDD AI+ N D+ ++ F NDFWGT + SHKS
Sbjct: 28 FVFDDVSAILDNKDLHPSTPLKTLFQNDFWGTPMSEERSHKS 69
>BC117175-1|AAI17176.1| 914|Homo sapiens transmembrane and
tetratricopeptide repeat containing 3 protein.
Length = 914
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 193 FVFDDAVAIVKNNDVTSEYGIQP-FYNDFWGTNIPTSLSHKS 315
FVFDD AI+ N D+ ++ F NDFWGT + SHKS
Sbjct: 28 FVFDDVSAILDNKDLHPSTPLKTLFQNDFWGTPMSEERSHKS 69
>AJ697717-1|CAG26973.1| 914|Homo sapiens SMILE protein protein.
Length = 914
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 193 FVFDDAVAIVKNNDVTSEYGIQP-FYNDFWGTNIPTSLSHKS 315
FVFDD AI+ N D+ ++ F NDFWGT + SHKS
Sbjct: 28 FVFDDVSAILDNKDLHPSTPLKTLFQNDFWGTPMSEERSHKS 69
>AL359085-4|CAI11006.1| 54|Homo sapiens transmembrane and
tetratricopeptide repeat containing 4 protein.
Length = 54
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 139 LSVTCLASLPFVFNLQGDFVFDDAVAIVKN 228
L V +A + F + GDFVFDD+ AIV N
Sbjct: 24 LVVGSVAIVCFARSYDGDFVFDDSEAIVNN 53
>BC111530-1|AAI11531.1| 1196|Homo sapiens CMYA5 protein protein.
Length = 1196
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -1
Query: 248 YSEVTSLFFTIATASSKTKSPCKLNTNGKLAKQVTLNSFNIEI 120
+ + T + + I+ K K+P KLN KL+K+VT + + +
Sbjct: 180 FEKYTLIDYNISPDPEKQKAPQKLNVEEKLSKEVTEETISFPV 222
>AL834252-1|CAD38928.2| 1332|Homo sapiens hypothetical protein
protein.
Length = 1332
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -1
Query: 248 YSEVTSLFFTIATASSKTKSPCKLNTNGKLAKQVTLNSFNIEI 120
+ + T + + I+ K K+P KLN KL+K+VT + + +
Sbjct: 316 FEKYTLIDYNISPDPEKQKAPQKLNVEEKLSKEVTEETISFPV 358
>AL832368-1|CAD91158.1| 1163|Homo sapiens hypothetical protein
protein.
Length = 1163
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -1
Query: 248 YSEVTSLFFTIATASSKTKSPCKLNTNGKLAKQVTLNSFNIEI 120
+ + T + + I+ K K+P KLN KL+K+VT + + +
Sbjct: 147 FEKYTLIDYNISPDPEKQKAPQKLNVEEKLSKEVTEETISFPV 189
>AL831966-1|CAD38607.1| 1470|Homo sapiens hypothetical protein
protein.
Length = 1470
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -1
Query: 248 YSEVTSLFFTIATASSKTKSPCKLNTNGKLAKQVTLNSFNIEI 120
+ + T + + I+ K K+P KLN KL+K+VT + + +
Sbjct: 454 FEKYTLIDYNISPDPEKQKAPQKLNVEEKLSKEVTEETISFPV 496
>Y15771-1|CAA75773.1| 122|Homo sapiens immunoglobulin heavy chain
Fab fragment protein.
Length = 122
Score = 27.5 bits (58), Expect = 9.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 250 GIQPFYNDFWGTNIPTSLS 306
G P+Y +WG IP S+S
Sbjct: 103 GFSPYYFPYWGQGIPVSVS 121
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,774,934
Number of Sequences: 237096
Number of extensions: 585709
Number of successful extensions: 1114
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1511340428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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