Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F22
         (317 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40060-5|AAA81143.2|  690|Caenorhabditis elegans Hypothetical pr...    53   4e-08
AF016427-4|AAB65353.1|  774|Caenorhabditis elegans Hypothetical ...    45   1e-05
Z47358-3|CAA87430.1|  127|Caenorhabditis elegans Hypothetical pr...    30   0.31 
Z49911-5|CAA90128.1|  431|Caenorhabditis elegans Hypothetical pr...    27   2.9  
AL031632-6|CAA21008.1|  338|Caenorhabditis elegans Hypothetical ...    25   8.9  

>U40060-5|AAA81143.2|  690|Caenorhabditis elegans Hypothetical
           protein F38B6.6 protein.
          Length = 690

 Score = 53.2 bits (122), Expect = 4e-08
 Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
 Frame = +1

Query: 136 LLSVTCLASLPFVFNLQGDFVFDDAVAIVKNNDVTSEYG-IQPFYNDFWGTNIPTSLSHK 312
           LL +  L+ +P++  L GDFVFDDA +IV N  V  +   +Q F  DFWG +I +S SHK
Sbjct: 32  LLILISLSIIPYLSCLGGDFVFDDAESIVNNPIVNGKDPLLQIFSRDFWGRSISSSNSHK 91

Query: 313 S 315
           S
Sbjct: 92  S 92


>AF016427-4|AAB65353.1|  774|Caenorhabditis elegans Hypothetical
           protein F32D1.3 protein.
          Length = 774

 Score = 45.2 bits (102), Expect = 1e-05
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +1

Query: 139 LSVTCLASLPFVFNLQGDFVFDDAVAIVKNNDVTSEYGIQPF--YNDFWGTNIPTSLSHK 312
           L V   AS+ +   L  DFV+DD  AI+ N+DV      +    +NDFWG  I    SHK
Sbjct: 24  LLVALFASIVYRITLNADFVYDDRPAILTNDDVLGRTPWRSLIVHNDFWGNPIGLQGSHK 83

Query: 313 S 315
           S
Sbjct: 84  S 84


>Z47358-3|CAA87430.1|  127|Caenorhabditis elegans Hypothetical
           protein ZK1307.2 protein.
          Length = 127

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 145 VTCLASLPFVFNLQGDFVFDDAVAIVKNNDVTSEYGIQPF 264
           +T L+ + F+       VF+     VK ND T+ YG  PF
Sbjct: 4   ITLLSGILFLIGYSDAEVFESQNVRVKRNDFTNNYGYGPF 43


>Z49911-5|CAA90128.1|  431|Caenorhabditis elegans Hypothetical
           protein M28.6 protein.
          Length = 431

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 118 KISMLKLLSVTCLASLPFVFNLQGDFVFDDAVA 216
           K++  KLL+   L ++   F  + DF+FDD VA
Sbjct: 324 KVNRGKLLNQATLNTISKPFVNESDFIFDDTVA 356


>AL031632-6|CAA21008.1|  338|Caenorhabditis elegans Hypothetical
           protein Y32B12B.6 protein.
          Length = 338

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 64  NFIYDAKVVSVCDKNNL*KISMLKLLSVTCLA 159
           NF Y + +  +C  NN   +  ++LLS+T LA
Sbjct: 274 NF-YSSSLFKICSMNNSGHVRFMELLSLTNLA 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,617,717
Number of Sequences: 27780
Number of extensions: 114571
Number of successful extensions: 283
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)