Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F22
         (317 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   0.67 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   2.1  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   2.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   2.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    20   6.3  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   8.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   8.3  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   8.3  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 0.67
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 214 AIVKNNDVTSEYGIQPFYNDFW 279
           +I K +DVT EY +Q  + + W
Sbjct: 69  SISKIDDVTMEYSVQLTFREQW 90


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 103 KNNL*KISMLKLLSVTCLASLPFVFNLQGDFV 198
           K+++  ++ +K L V     + FVF   G+FV
Sbjct: 250 KSDIPPVAYVKALDVWMAGCMMFVFAALGEFV 281


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -2

Query: 289 YSCPRNHCKKVESHILKSH 233
           + CP  H +    H LK+H
Sbjct: 10  FECPECHKRFTRDHHLKTH 28


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 103 KNNL*KISMLKLLSVTCLASLPFVFNLQGDFVFDDAV 213
           +N+L K+S +K   +  L    F+F    +F F + +
Sbjct: 282 ENSLPKVSYIKASEIWFLGCTIFLFAAMVEFAFVNTI 318


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 236 TSLFFTIATASSKTKSPCK 180
           +SLF TIA     T+  CK
Sbjct: 176 SSLFVTIAVDVRDTEDKCK 194


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 49  LGKYILFT 26
           LGKY+LFT
Sbjct: 299 LGKYLLFT 306


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 49  LGKYILFT 26
           LGKY+LFT
Sbjct: 298 LGKYLLFT 305


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -2

Query: 49  LGKYILFT 26
           LGKY+LFT
Sbjct: 312 LGKYLLFT 319


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,283
Number of Sequences: 438
Number of extensions: 1391
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6844365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)