Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F21
         (364 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0210 + 19082778-19082940,19083806-19083875,19084172-190842...    29   0.85 
02_05_0625 + 30453521-30453890,30454215-30454352,30454458-304547...    29   1.1  
01_01_0060 + 477667-477816,479312-479722                               27   3.4  
03_01_0603 + 4445977-4446882                                           27   4.5  
02_02_0293 - 8639826-8639852,8640161-8640361,8641165-8641611,864...    27   6.0  
07_01_0771 + 5917550-5917829,5918390-5918526,5918617-5918742,591...    26   7.9  
06_01_0030 - 296681-296789,296903-297105,297348-297426,297512-29...    26   7.9  
03_02_1036 + 13573160-13573243,13573361-13573684,13573880-135741...    26   7.9  

>05_04_0210 +
           19082778-19082940,19083806-19083875,19084172-19084295,
           19084442-19084897
          Length = 270

 Score = 29.5 bits (63), Expect = 0.85
 Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
 Frame = -2

Query: 357 LVSRSLWIATDEPNRGFFGANRA*A---WLPKRDRSPLTVGCGAXGLSQGRLKVSXWK 193
           L + S   A  E  RG  G  RA     W  +RD       CGA     G LK   WK
Sbjct: 6   LATESARAAAAEDRRGADGIRRAEGSGGWRRRRDGHVARARCGAGEPDAGNLKAKCWK 63


>02_05_0625 +
           30453521-30453890,30454215-30454352,30454458-30454727,
           30454844-30454983,30455067-30455213,30455319-30456008
          Length = 584

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 178 SAXRTTQHSNVNPTPNSDG*YKPSP 104
           S   +T HS++N  P +D  YKP P
Sbjct: 459 SFASSTSHSSLNSAPRTDASYKPQP 483


>01_01_0060 + 477667-477816,479312-479722
          Length = 186

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +3

Query: 240 RNRRL--KGSCLVSAARLRLCSHRRNHGLVHRSRSTSSVRPS 359
           +NRRL  KG CL  ++ +   + RR+H   H S S+SS  PS
Sbjct: 8   KNRRLHMKGLCLKLSSLIPAAAPRRHHH--HYSTSSSSSPPS 47


>03_01_0603 + 4445977-4446882
          Length = 301

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 173 CTLPGKFFXXETLSLP*DRPLAPQPTVKG 259
           C LP KF+         DRP+AP P   G
Sbjct: 14  CRLPDKFYCALPDCTTTDRPVAPAPAASG 42


>02_02_0293 -
           8639826-8639852,8640161-8640361,8641165-8641611,
           8641726-8641816,8642949-8643949
          Length = 588

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 223 RQTXSAATDG*RAPVSFRQPGSGSVRTEETTVWFIG 330
           R+   AA +  RA V   Q G+G +R     +WF+G
Sbjct: 305 RRDSGAADELQRAHVVAGQIGAGRLRAPAGAIWFVG 340


>07_01_0771 +
           5917550-5917829,5918390-5918526,5918617-5918742,
           5919168-5919221,5919344-5919457,5919895-5919950,
           5920017-5920058,5920580-5920655,5920765-5920836,
           5920908-5921033,5921117-5921221,5921333-5921416,
           5921636-5921683
          Length = 439

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +2

Query: 224 DRPLAPQPTVKGLLSRFGS---QAQALFAPKKPRFGSSVAIHKLRE 352
           D  LA  P +   L R+G        LFAP  PRFG SV  + + E
Sbjct: 63  DFRLADDPKLS--LHRYGQYLYDGLVLFAPSTPRFGGSVDQNSILE 106


>06_01_0030 -
           296681-296789,296903-297105,297348-297426,297512-297877,
           298590-298956,299235-299373,299461-299731,299849-299958,
           300567-300704
          Length = 593

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 265 VSFRQPGSGSVRTEETTVWFIGRD 336
           +S   PG  +VRTE    W++G++
Sbjct: 501 LSLDSPGFWNVRTENLDTWYLGQE 524


>03_02_1036 +
           13573160-13573243,13573361-13573684,13573880-13574143,
           13574662-13574793,13574919-13575620
          Length = 501

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +2

Query: 227 RPLAPQ--PTVKGLLSRFGSQAQALFAPKKPRFGSSVAIHKLR 349
           RP A Q  P VKG ++   S+++   +P +  FGS  A+H+L+
Sbjct: 453 RPAAAQRSPRVKGPMTPTRSRSRR--SPGRHSFGSEAALHQLQ 493


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,342,815
Number of Sequences: 37544
Number of extensions: 194665
Number of successful extensions: 462
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)