Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F21
         (364 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ269478-1|ABB82947.1|  304|Homo sapiens homeobox containing 1 t...    29   3.4  
BC069242-1|AAH69242.1|  420|Homo sapiens homeobox containing 1 p...    29   3.4  
AY522342-1|AAS76643.1|  420|Homo sapiens homeobox containing 1 t...    29   3.4  
DQ840856-1|ABI74383.1|  118|Homo sapiens immunoglobulin heavy ch...    29   5.9  
BC028136-1|AAH28136.1|  549|Homo sapiens zinc finger protein 34 ...    29   5.9  
BC004480-1|AAH04480.1|  539|Homo sapiens ZNF34 protein protein.        29   5.9  
AM080103-1|CAL04249.1|  101|Homo sapiens immunoglobulin heavy ch...    29   5.9  
AF231397-1|AAF75630.1|  131|Homo sapiens immunoglobulin heavy ch...    28   7.8  

>DQ269478-1|ABB82947.1|  304|Homo sapiens homeobox containing 1
           transcript variant b protein.
          Length = 304

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/89 (23%), Positives = 36/89 (40%)
 Frame = -1

Query: 358 LGLTELVDRDR*TKPWFLRCEQSLSLAAETRQEPFNRRLRR*XSVSGQA*SLAXEKLXRQ 179
           + L + + R   TK   L   ++L    +   + F RR     S  G + +         
Sbjct: 27  IDLLQRLRRTGMTKHEILHALETLDRLDQEHSDKFGRRSSYGGSSYGNSTNNVPASSSTA 86

Query: 178 SAXRTTQHSNVNPTPNSDG*YKPSPTLKN 92
           +A   TQHS ++P+P++     P P   N
Sbjct: 87  TASTQTQHSGMSPSPSNSYDTSPQPCTTN 115


>BC069242-1|AAH69242.1|  420|Homo sapiens homeobox containing 1
           protein.
          Length = 420

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/89 (23%), Positives = 36/89 (40%)
 Frame = -1

Query: 358 LGLTELVDRDR*TKPWFLRCEQSLSLAAETRQEPFNRRLRR*XSVSGQA*SLAXEKLXRQ 179
           + L + + R   TK   L   ++L    +   + F RR     S  G + +         
Sbjct: 27  IDLLQRLRRTGMTKHEILHALETLDRLDQEHSDKFGRRSSYGGSSYGNSTNNVPASSSTA 86

Query: 178 SAXRTTQHSNVNPTPNSDG*YKPSPTLKN 92
           +A   TQHS ++P+P++     P P   N
Sbjct: 87  TASTQTQHSGMSPSPSNSYDTSPQPCTTN 115


>AY522342-1|AAS76643.1|  420|Homo sapiens homeobox containing 1
           transcript variant a protein.
          Length = 420

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/89 (23%), Positives = 36/89 (40%)
 Frame = -1

Query: 358 LGLTELVDRDR*TKPWFLRCEQSLSLAAETRQEPFNRRLRR*XSVSGQA*SLAXEKLXRQ 179
           + L + + R   TK   L   ++L    +   + F RR     S  G + +         
Sbjct: 27  IDLLQRLRRTGMTKHEILHALETLDRLDQEHSDKFGRRSSYGGSSYGNSTNNVPASSSTA 86

Query: 178 SAXRTTQHSNVNPTPNSDG*YKPSPTLKN 92
           +A   TQHS ++P+P++     P P   N
Sbjct: 87  TASTQTQHSGMSPSPSNSYDTSPQPCTTN 115


>DQ840856-1|ABI74383.1|  118|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 118

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 292 SVRTEETTVWFIGRDPQAP*DQVV 363
           S+R E+T V++ GRDP  P   VV
Sbjct: 84  SLRVEDTAVYYCGRDPGLPNGMVV 107


>BC028136-1|AAH28136.1|  549|Homo sapiens zinc finger protein 34
           protein.
          Length = 549

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 297 SHRRNHGLVHRSRSTSSVRPSG 362
           S+  NH  VHRS+ T++VR SG
Sbjct: 197 SYLNNHKRVHRSKKTNTVRNSG 218


>BC004480-1|AAH04480.1|  539|Homo sapiens ZNF34 protein protein.
          Length = 539

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 297 SHRRNHGLVHRSRSTSSVRPSG 362
           S+  NH  VHRS+ T++VR SG
Sbjct: 187 SYLNNHKRVHRSKKTNTVRNSG 208


>AM080103-1|CAL04249.1|  101|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 101

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 255 LTVGCGAXGLSQGRLKVSXWKNXPGK 178
           L + C A GL+ GR  VS  +  PGK
Sbjct: 21  LRLSCAATGLTSGRFAVSWVRQAPGK 46


>AF231397-1|AAF75630.1|  131|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 131

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 292 SVRTEETTVWFIGRDPQAP*DQVV 363
           S+R E+T V++  +DP+ P D VV
Sbjct: 85  SLRAEDTAVYYCAKDPRTPPDIVV 108


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,366,637
Number of Sequences: 237096
Number of extensions: 1220432
Number of successful extensions: 6411
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6411
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2248517154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)