Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F21
         (364 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00066-9|AAA50743.3|  780|Caenorhabditis elegans Mediator protei...    29   1.00 
U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protei...    29   1.00 
AF025456-2|AAB70958.1|  441|Caenorhabditis elegans Hypothetical ...    26   9.3  

>U00066-9|AAA50743.3|  780|Caenorhabditis elegans Mediator protein
           15, isoform a protein.
          Length = 780

 Score = 29.1 bits (62), Expect = 1.00
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 246 RRLKGSCLVSAARLRLCSHRRNHGLVHRSRSTSSV 350
           R ++GSC     R R C H  NH   H+     SV
Sbjct: 376 RNMRGSCDSLRTRARQCRHEGNHEAAHKLEVMLSV 410


>U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protein
           15, isoform b protein.
          Length = 777

 Score = 29.1 bits (62), Expect = 1.00
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 246 RRLKGSCLVSAARLRLCSHRRNHGLVHRSRSTSSV 350
           R ++GSC     R R C H  NH   H+     SV
Sbjct: 373 RNMRGSCDSLRTRARQCRHEGNHEAAHKLEVMLSV 407


>AF025456-2|AAB70958.1|  441|Caenorhabditis elegans Hypothetical
           protein C46F9.3 protein.
          Length = 441

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 145 NPTPNSDG*YKPSPTLKN*FVFVVWAVNYSHLDNH 41
           N  P+SD  +    T KN   FVV   +YS L+ H
Sbjct: 139 NSQPDSDNSFVMKHTFKNISRFVVKERDYSDLEEH 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,472,616
Number of Sequences: 27780
Number of extensions: 154303
Number of successful extensions: 350
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)