Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F20
         (218 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    24   3.1  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    24   3.1  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    23   4.1  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    23   7.2  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    23   7.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    23   7.2  
SPAC23A1.03 |apt1||adenine phosphoribosyltransferase |Schizosacc...    22   9.6  
SPBC8D2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    22   9.6  

>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 141 CSFKLVQTKYFSKVDLKSEL 200
           C+FKL+  K +S  D+  EL
Sbjct: 14  CTFKLILQKRYSHTDILKEL 33


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 216 ECMGHVIRTSSQPSKSTSFE 157
           EC+ HVI +S   +K TS E
Sbjct: 769 ECLTHVITSSEDMAKQTSNE 788


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 133 IHTARLSWFKRSTFRRL 183
           +H    SWFKRS F ++
Sbjct: 201 LHHCESSWFKRSIFYKI 217


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 118 IYLCNIHTARLSWFKRSTFRRLT*SPNYV 204
           + L N H  R  W K     R T S NY+
Sbjct: 69  VVLLNEHCQRSKWEKSDVKVRQTKSKNYI 97


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/21 (33%), Positives = 17/21 (80%)
 Frame = -1

Query: 191 LQVNLRKVLRLNQLKRAVWIL 129
           LQ++  K+L+++++++A W L
Sbjct: 676 LQIHADKMLKMSEVEKANWTL 696


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = -2

Query: 157  TNLNEQCGYYTNKSKAIKQP*KIY*KDLFIIMKSYPH 47
            T + + C  + N    + +   IY   LFI+   +P+
Sbjct: 1775 TEMLKMCSLFGNSEDVMIKQLSIYVMSLFILRSQFPY 1811


>SPAC23A1.03 |apt1||adenine phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 1   ARGFIFY*SKEIRRNCA 51
           ARGF+F  +  +R NCA
Sbjct: 65  ARGFLFGPTLALRANCA 81


>SPBC8D2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 122

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 71 HYNEKLPAQFLRISFD 24
          HYN +LP Q    SF+
Sbjct: 31 HYNGRLPEQLENFSFE 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 898,477
Number of Sequences: 5004
Number of extensions: 14304
Number of successful extensions: 25
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 52
effective length of database: 2,102,270
effective search space used: 42045400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)