Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F20
         (218 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0953 - 21108814-21108849,21109029-21109098,21109707-21109912     26   3.6  
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043...    26   4.7  
07_03_0123 - 13688562-13689146,13689233-13689583,13689665-136898...    25   6.3  
03_06_0596 + 34964109-34964189,34964286-34964481,34964567-349647...    25   6.3  

>04_03_0953 - 21108814-21108849,21109029-21109098,21109707-21109912
          Length = 103

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 8/13 (61%), Positives = 13/13 (100%)
 Frame = -1

Query: 83  KRFIHYNEKLPAQ 45
           ++F+HYNE+LP+Q
Sbjct: 71  EQFVHYNEELPSQ 83


>10_07_0063 -
           12502305-12503361,12503567-12503668,12504251-12504378,
           12504653-12504764,12504876-12504927,12505260-12505517,
           12505943-12506079,12506296-12506606
          Length = 718

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 113 F*FICVISTLLV*VGSNEVL 172
           F FIC +STLL+   +NE+L
Sbjct: 199 FFFICYLSTLLIFCNANELL 218


>07_03_0123 -
           13688562-13689146,13689233-13689583,13689665-13689861,
           13689954-13690072,13690103-13690245,13690332-13690544,
           13690649-13690774,13690891-13691028,13691109-13691454,
           13691532-13691798,13691939-13691983,13692148-13692349,
           13692405-13692507,13692599-13692810,13692891-13693113,
           13693211-13693291
          Length = 1116

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 151 LNEQCGYYTNKSKAIKQ 101
           LN  C +Y N SKAIK+
Sbjct: 595 LNLDCDHYINNSKAIKE 611


>03_06_0596 +
           34964109-34964189,34964286-34964481,34964567-34964775,
           34964868-34964970,34965053-34965227,34965617-34965883,
           34965966-34966311,34966396-34966533,34966645-34966770,
           34966866-34967078,34967171-34967462,34967559-34967755,
           34967844-34968194,34968290-34968874
          Length = 1092

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 151 LNEQCGYYTNKSKAIKQ 101
           LN  C +Y N SKAIK+
Sbjct: 561 LNLDCDHYINNSKAIKE 577


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,888,334
Number of Sequences: 37544
Number of extensions: 67855
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 14,793,348
effective HSP length: 52
effective length of database: 12,841,060
effective search space used: 256821200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)