Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_F19
(295 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 25 1.8
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 25 3.1
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce... 25 3.1
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 24 4.0
SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar... 24 4.0
SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces pomb... 24 5.3
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac... 23 7.1
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 23 7.1
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 23 7.1
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 23 9.3
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 23 9.3
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 25.4 bits (53), Expect = 1.8
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +1
Query: 151 FLC-QTRTCIQPSHYFPATAQDGASSAEQNATCYYGAKKC 267
FLC T+ + S+ P QD + TC AKKC
Sbjct: 199 FLCGDTKDFVSCSNNVPFLTQDIVNCLVSIRTCMLNAKKC 238
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 24.6 bits (51), Expect = 3.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 291 LNSSDFGRTFLGAVVASGVLFGARSAIL 208
+ S FG+ +LG +SG L + IL
Sbjct: 400 IGSGSFGQVYLGMNASSGELMAVKQVIL 427
>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 568
Score = 24.6 bits (51), Expect = 3.1
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +3
Query: 117 VELLAEFRIGFLLVPNAHVHTAVTLLSRYGTRWRFERRTKRHLLLR 254
++ L+ RIGFL + +H+ G RW++ K L LR
Sbjct: 299 MKTLSPQRIGFLTPADKSLHSRYIAEMNVGKRWQWSDLLKSCLDLR 344
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 24.2 bits (50), Expect = 4.0
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 188 CDGCMHVRVWHKKKSDSEFSEELNNGGVEVS-AVSSHSGDISR 63
CD C+++ + D E GG+ +S + +++ D+S+
Sbjct: 601 CDACLNLGTHSESIGDLEHQIRRYTGGISISPSAVTNNSDVSK 643
>SPAC30C2.05 |erv14||cornichon family protein
Erv14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 141
Score = 24.2 bits (50), Expect = 4.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 138 RIGFLLVPNAHVHTAVTLLSRYGTRW 215
++ L++P HT VTLL G +W
Sbjct: 50 KLNDLVMPEIISHTLVTLLLLLGKKW 75
>SPAC20H4.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 250
Score = 23.8 bits (49), Expect = 5.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 142 IRNSARSSTMAESRFQQYHRTRATYLDSVS 53
+R + + T + Q+HR R T LDS++
Sbjct: 140 LREAGFTETEVNNLRSQFHRLRGTNLDSLT 169
>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
Rad4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 648
Score = 23.4 bits (48), Expect = 7.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 155 KKKSDSEFSEELNNGGVEVSAVSSHS 78
KK+ S EELNNG E S+ S +
Sbjct: 245 KKRDRSILWEELNNGKFEFSSRSEEN 270
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 23.4 bits (48), Expect = 7.1
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 158 HKKKSDS-EFSEELNNGGVEVSAVSSHSGDISRLCLYLYLCISIFLPRAE 12
H ++D+ + +EL G +E + SR+CLY+ C+++ LP E
Sbjct: 200 HNAEADAIDLLQEL--GAIEKVVPFVELDNASRVCLYITSCVNL-LPFPE 246
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 23.4 bits (48), Expect = 7.1
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -3
Query: 140 SEFSEELNNGGVEVSAVSSHSGDISRLC 57
+E L +GG+++ S I RLC
Sbjct: 303 AEGESALPSGGIQIQITQEESESIDRLC 330
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 23.0 bits (47), Expect = 9.3
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -1
Query: 166 AFGTRRNPIRNSARSSTMAESRFQQYHRTRATYLDSVSIY 47
A G RR+ +RN A S +M+ + + +++ +S+Y
Sbjct: 179 AGGMRRDFLRNRASSISMSSNAHGNPNFLNRNFIEFLSVY 218
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 23.0 bits (47), Expect = 9.3
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +3
Query: 189 LLSRYGTRWRFERRTKRHLLLRRQEMSV 272
L+ YG W+ + ++ RR EM V
Sbjct: 687 LIMGYGILWQLDEKSSERRKARRLEMEV 714
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,123,599
Number of Sequences: 5004
Number of extensions: 18748
Number of successful extensions: 52
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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