Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_F19
(295 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0588 - 34924061-34924644,34924662-34925058 29 0.86
06_01_0918 + 7083570-7083705,7083977-7084008 28 1.1
10_02_0115 + 5445580-5445606,5446118-5446609 27 2.0
06_01_0104 - 845639-845947 27 2.0
11_08_0083 + 28256844-28258760 27 2.6
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696... 27 2.6
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 27 2.6
07_03_1217 - 24943466-24943828,24944207-24944374,24944941-249450... 27 3.5
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 26 4.6
02_05_1276 + 35397948-35398298,35398937-35401738,35402085-354023... 26 4.6
04_04_0264 + 24035282-24035686,24036877-24037118,24037230-240377... 26 6.1
01_06_0661 - 30977760-30977783,30977944-30978014,30978045-30979464 26 6.1
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442... 25 8.0
02_03_0343 + 17961977-17962596,17962670-17963015,17965933-179662... 25 8.0
>03_06_0588 - 34924061-34924644,34924662-34925058
Length = 326
Score = 28.7 bits (61), Expect = 0.86
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -3
Query: 161 WHKKKSDSEFSEELNNGGVEVSAVSSHSGDISRLCLYLYLCISI 30
W K +D F E NGG+ V + H I C +L S+
Sbjct: 272 WMKLNTDGSFQAEAGNGGIGVVLRNCHGEIIFSACGFLQRTSSV 315
>06_01_0918 + 7083570-7083705,7083977-7084008
Length = 55
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 197 PLRHKMALRAPNKTPLATTAPRNVRPKSLE 286
P H ALRAP + L+TT PR P+ L+
Sbjct: 14 PSAHAAALRAPASSVLSTTPPRQT-PRRLD 42
>10_02_0115 + 5445580-5445606,5446118-5446609
Length = 172
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = -1
Query: 271 TDISWRRSSKWRFVRRSKRHLVP*RESNVTAVCTCAFGTRRNPIRNSARSSTMAES 104
T ++WRR +WR +R S R V E+ + R P R ++SS + E+
Sbjct: 26 TWVAWRRRRRWR-IRWSARQSVE-EEAAANPIVVEVEQPMRRPTRAGSQSSAVREA 79
>06_01_0104 - 845639-845947
Length = 102
Score = 27.5 bits (58), Expect = 2.0
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Frame = -3
Query: 230 SALEAPSCAVAGK*CDGCMHV--RVWHKKKSDSEFSEELNNGGVEVSAVSSHSGDISRLC 57
SA A + A A C H + W +K+ + E EE N G GD++R
Sbjct: 38 SASRAGAVATAAGSMGRCCHAGEKKWEEKEKEKEEEEEGNGDGRMTCGFLCDFGDVNRET 97
Query: 56 LYLYL 42
+ Y+
Sbjct: 98 VGAYI 102
>11_08_0083 + 28256844-28258760
Length = 638
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = -1
Query: 250 SSKWRFVRRSKRHLVP*RESNVTAVCTCAFG 158
++KW VRR HL P E V C G
Sbjct: 437 AAKWETVRREDLHLDPEEEEEEVLVVNCLHG 467
>09_04_0308 +
16567361-16568854,16568946-16569068,16569372-16569649,
16570316-16571924,16572363-16573781
Length = 1640
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +2
Query: 134 IPNRISSCAKRARAYSRHITFPLRHKMALRAPNKTPLATTAPRNV 268
+P + S A A RH+ L + L +P L + PR+V
Sbjct: 48 VPEFLGSAAVEPNALYRHVQLYLHRSLLLSSPPPPRLTLSLPRSV 92
>04_04_1477 +
33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 207 TRWRFERRTKRHLLLRRQEMS 269
+RW F RR+ RH +L+ ++S
Sbjct: 113 SRWSFRRRSTRHRVLKNSDIS 133
>07_03_1217 -
24943466-24943828,24944207-24944374,24944941-24945009,
24945091-24945197,24945846-24945980,24946090-24946195,
24946758-24946794,24949795-24949832
Length = 340
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 169 TCIQPSHYFPATAQDGASSAEQNATCYYGAKKCPSKV 279
T ++PSH A A +G SS+ A YY K+ K+
Sbjct: 35 TKVRPSHNANAFATNGRSSSPYYAQLYYQMKQLGHKM 71
>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 182 RHITFPLRHKMALRAPNKTPLATTAPRNVRPKSL 283
RH+T P ++ + PL TA RN R +SL
Sbjct: 1291 RHLTLPEKYAPPTELIDLQPLPVTALRNARYESL 1324
>02_05_1276 +
35397948-35398298,35398937-35401738,35402085-35402306,
35402503-35402562,35402615-35402698,35402740-35402816,
35403147-35403363
Length = 1270
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = -3
Query: 140 SEFSEELNNGGVEVSAVSSHSGDISRLCLYLYLCISIFL 24
S S GG SA+S SG S C+ LCI + L
Sbjct: 179 SSISPPARRGGRHPSAISLMSGTGSHPCMLPGLCIPVVL 217
>04_04_0264 +
24035282-24035686,24036877-24037118,24037230-24037750,
24038262-24038746
Length = 550
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 280 RLWTDISWRRSSKWRFVRRSKRHLVP*RESNVTAVC 173
+L TD S + SSKW+ + S H+ N T VC
Sbjct: 458 QLGTDCS-KSSSKWQLISNSGMHVSTELTKNGTRVC 492
>01_06_0661 - 30977760-30977783,30977944-30978014,30978045-30979464
Length = 504
Score = 25.8 bits (54), Expect = 6.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 261 LGAVVASGVLFGARSAILC 205
LGA++ S FGA +LC
Sbjct: 340 LGAIIRSAYFFGAEGVVLC 358
>04_04_0239 -
23843235-23843243,23843334-23844047,23844138-23844287,
23844389-23844601,23844697-23844811,23844919-23846300,
23847217-23847279
Length = 881
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -1
Query: 178 VCTCAFGTRRNPIRNSARSSTMAESRFQQYHRTRATYLDSVSI 50
+C A R NP+R + + ++ H+T+ LDS+S+
Sbjct: 83 LCDAAISQRLNPLRINVELKSSSDG----VHQTKQQVLDSISV 121
>02_03_0343 +
17961977-17962596,17962670-17963015,17965933-17966291,
17966384-17966636
Length = 525
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/33 (27%), Positives = 17/33 (51%)
Frame = +1
Query: 178 QPSHYFPATAQDGASSAEQNATCYYGAKKCPSK 276
+P+ + P +DG S + G +KCP++
Sbjct: 434 EPTSFIPERFEDGRSEGKMAIPFGMGRRKCPAE 466
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,699,862
Number of Sequences: 37544
Number of extensions: 137453
Number of successful extensions: 436
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -