Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F19
         (295 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF283374-1|AAL38108.1| 1731|Homo sapiens candidate tumor suppres...    30   1.5  
AF176832-1|AAF70379.1| 4599|Homo sapiens low density lipoprotein...    30   1.5  
AC110087-1|AAY24167.1|  132|Homo sapiens unknown protein.              30   1.5  
D86983-1|BAA13219.1| 1496|Homo sapiens KIAA0230 protein.               28   6.2  
AF200348-1|AAF06354.1| 1496|Homo sapiens melanoma-associated ant...    28   6.2  
BC009842-1|AAH09842.1|  316|Homo sapiens nudix (nucleoside dipho...    27   8.2  
AF019633-1|AAD01636.2|  316|Homo sapiens antisense basic fibrobl...    27   8.2  

>AF283374-1|AAL38108.1| 1731|Homo sapiens candidate tumor suppressor
            protein protein.
          Length = 1731

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = -3

Query: 245  QVAFCSALEAPSCAVAGK*CDGCMHVRVWHKKKSDSEFSEELNNGGVEVSAVSSHSGDIS 66
            Q+  CS  +  +  +      G +H++V+ K+      S +LNNGG   S +   + + +
Sbjct: 875  QLGTCSKRDGRNPTILRNKTSGVVHMKVYDKEAQQGSNSCQLNNGG--CSQLCLPTSETT 932

Query: 65   RLCL 54
            R C+
Sbjct: 933  RTCM 936


>AF176832-1|AAF70379.1| 4599|Homo sapiens low density lipoprotein
            receptor related protein-deleted in tumor protein.
          Length = 4599

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = -3

Query: 245  QVAFCSALEAPSCAVAGK*CDGCMHVRVWHKKKSDSEFSEELNNGGVEVSAVSSHSGDIS 66
            Q+  CS  +  +  +      G +H++V+ K+      S +LNNGG   S +   + + +
Sbjct: 1799 QLGTCSKRDGRNPTILRNKTSGVVHMKVYDKEAQQGSNSCQLNNGG--CSQLCLPTSETT 1856

Query: 65   RLCL 54
            R C+
Sbjct: 1857 RTCM 1860


>AC110087-1|AAY24167.1|  132|Homo sapiens unknown protein.
          Length = 132

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = -3

Query: 245 QVAFCSALEAPSCAVAGK*CDGCMHVRVWHKKKSDSEFSEELNNGGVEVSAVSSHSGDIS 66
           Q+  CS  +  +  +      G +H++V+ K+      S +LNNGG   S +   + + +
Sbjct: 12  QLGTCSKRDGRNPTILRNKTSGVVHMKVYDKEAQQGSNSCQLNNGG--CSQLCLPTSETT 69

Query: 65  RLCL 54
           R C+
Sbjct: 70  RTCM 73


>D86983-1|BAA13219.1| 1496|Homo sapiens KIAA0230 protein.
          Length = 1496

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 211  LVP*RESNVTAVCTCAFGTRRNPIRNSARSSTMAESRFQQYHRTRAT-YLDSVSIY 47
            ++P  +S   +   C F  R +P+  S  +S +  S + +    + T Y+D+ ++Y
Sbjct: 878  MIPPNDSRARSGARCMFFVRSSPVCGSGMTSLLMNSVYPREQINQLTSYIDASNVY 933


>AF200348-1|AAF06354.1| 1496|Homo sapiens melanoma-associated antigen
            MG50 protein.
          Length = 1496

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -1

Query: 211  LVP*RESNVTAVCTCAFGTRRNPIRNSARSSTMAESRFQQYHRTRAT-YLDSVSIY 47
            ++P  +S   +   C F  R +P+  S  +S +  S + +    + T Y+D+ ++Y
Sbjct: 878  MIPPNDSRARSGARCMFFVRSSPVCGSGMTSLLMNSVYPREQINQLTSYIDASNVY 933


>BC009842-1|AAH09842.1|  316|Homo sapiens nudix (nucleoside
           diphosphate linked moiety X)-type motif 6 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 183 RLYARARLAQEEIRFGIQRGAQQWRSRGFSSI 88
           RL A  RL     + G+Q   QQWRS G +++
Sbjct: 62  RLDALDRLDAAAFQKGLQAAVQQWRSEGRTAV 93


>AF019633-1|AAD01636.2|  316|Homo sapiens antisense basic fibroblast
           growth factor B protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 183 RLYARARLAQEEIRFGIQRGAQQWRSRGFSSI 88
           RL A  RL     + G+Q   QQWRS G +++
Sbjct: 62  RLDALDRLDAAAFQKGLQAAVQQWRSEGRTAV 93


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,003,909
Number of Sequences: 237096
Number of extensions: 699985
Number of successful extensions: 1919
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1918
length of database: 76,859,062
effective HSP length: 74
effective length of database: 59,313,958
effective search space used: 1364221034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)