Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F19
         (295 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   0.59 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   1.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    20   7.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    20   7.3  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 0.59
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 105 DSAIVELLAEFRIGFLLVPNAHVHTAVTLLSRYGTRWRFER 227
           + A+ E L   R+G + +  A +H  +   S YG   RF+R
Sbjct: 574 EDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYG---RFKR 611


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 160 QTRTCIQPSHYFPATAQDGASSAEQNATCYYGAKKC 267
           Q  + +QP H  P   Q  +SSA  + TC     +C
Sbjct: 266 QLNSDVQPGHGSPPVKQHRSSSA--STTCSGHTVRC 299


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 161 WHKKKSDSEFSEELNNGGV 105
           WH+K+     S   N GGV
Sbjct: 255 WHQKELVRRDSRRKNYGGV 273


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 201  YGTRWRFERRTKRHLLLRRQE 263
            YG  W F    +R+L L RQE
Sbjct: 999  YGKVWLFFGCRQRNLDLYRQE 1019


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,691
Number of Sequences: 438
Number of extensions: 1127
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5994288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)