Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F18
         (224 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    24   3.1  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    23   4.1  
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    23   4.1  
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    23   5.4  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    23   7.2  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    23   7.2  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    22   9.5  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    22   9.5  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 179  PIFLKKLIKTSFPLVTPHRYFLNS 108
            PIF KK+ +  FP+V   + + NS
Sbjct: 1027 PIFSKKICENRFPVVEGLQEYCNS 1050


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 206  TEKLLTHYFPIFLKKLI--KTSFPLVTPHRYFLNS 108
            T KLL++ F     K++  K +F L++ HRYF  S
Sbjct: 1025 TVKLLSNDFSKKKWKVVASKNAFALLSKHRYFYAS 1059


>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -3

Query: 222 TSIIYYGKIINTLFS 178
           TS++ YG+++ T+FS
Sbjct: 110 TSLLQYGEVVTTVFS 124


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 173 FLKKLIKTSFPLVTPHRYFLNS 108
           FLK+  K+  PL   +R+F+++
Sbjct: 85  FLKQTAKSKSPLTAAYRHFMDT 106


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 158 IKTSFPLVTPHRY 120
           + +SFPL T HRY
Sbjct: 360 VDSSFPLSTQHRY 372


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -3

Query: 207  YGKIINTLFSDFSEKTNKNF 148
            YGK++ T+F + S +T+ +F
Sbjct: 1974 YGKLLCTMFFEPSTRTSSSF 1993


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 145 SHWSPLIDIF*IVFKYFIFWTKPVD 71
           +H +P  D+F   F Y + W++ +D
Sbjct: 865 NHKAPGADLFRFSFDYGLHWSEWID 889


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +2

Query: 20  WQN*ILKNYETRIRGKNIYWLGPKNKIFKNYLKN 121
           W    L     ++RG  I  + P + I   YLK+
Sbjct: 174 WSRFFLSKLCKKLRGDRITPMDPSDDIMDKYLKD 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 925,100
Number of Sequences: 5004
Number of extensions: 15872
Number of successful extensions: 29
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)