Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F18
         (224 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0322 - 7240125-7241568,7242043-7243253,7245782-7246144,724...    28   1.2  
10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076     25   8.2  
08_02_1039 - 23866743-23866862,23866985-23867266,23867868-238679...    25   8.2  

>09_02_0322 -
           7240125-7241568,7242043-7243253,7245782-7246144,
           7246502-7246522
          Length = 1012

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = -1

Query: 224 RHRLYITEKLLTHYFPIFLKKLIKTSFPLVTPHRYFLNSF*IFYFLDQASRYFFL*YEFH 45
           R R +   K+L    P FL    +TS  +++ H Y   S  + +F+ +         EF 
Sbjct: 518 RARCFPVGKVLNFMLPEFLDCTARTSLEMLSKHYYQAASSWVVFFVPENDADMAAYNEFM 577

Query: 44  NFL 36
           N+L
Sbjct: 578 NYL 580


>10_08_0405 - 17657678-17658110,17658219-17659663,17659708-17660076
          Length = 748

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 105 KTI*KISMRGDQWEGSF 155
           K I K ++ GDQWE SF
Sbjct: 621 KKIAKTAISGDQWENSF 637


>08_02_1039 -
           23866743-23866862,23866985-23867266,23867868-23867966,
           23868595-23868903
          Length = 269

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 204 GKIINTLFSDFSEKTNKNFLPT 139
           G+ IN +F D + K NK+  PT
Sbjct: 234 GRSINVMFKDDNAKKNKSAAPT 255


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,952,185
Number of Sequences: 37544
Number of extensions: 71493
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)