Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F18
         (224 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC044581-1|AAH44581.1|  523|Homo sapiens PKD2L2 protein protein.       30   1.5  
AF182034-1|AAF65622.1|  624|Homo sapiens polycystic kidney disea...    30   1.5  
AF118125-1|AAD46478.1|  609|Homo sapiens polycystin-2-like prote...    30   1.5  
AB051444-1|BAB33327.1|  127|Homo sapiens KIAA1657 protein protein.     28   6.2  

>BC044581-1|AAH44581.1|  523|Homo sapiens PKD2L2 protein protein.
          Length = 523

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 224 RHRLYITEKL--LTHYFPIFLKKLIKTSFPLVTPHRYFLNSF*IFYFLD 84
           R  + IT  L  L  YF IFL  L   +F +V PH Y+LN      FLD
Sbjct: 20  RKEVEITTTLQELLLYF-IFLINLCILTFGMVNPHMYYLNKVMSSLFLD 67


>AF182034-1|AAF65622.1|  624|Homo sapiens polycystic kidney
           disease-like 2 protein protein.
          Length = 624

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 224 RHRLYITEKL--LTHYFPIFLKKLIKTSFPLVTPHRYFLNSF*IFYFLD 84
           R  + IT  L  L  YF IFL  L   +F +V PH Y+LN      FLD
Sbjct: 20  RKEVEITTTLQELLLYF-IFLINLCILTFGMVNPHMYYLNKVMSSLFLD 67


>AF118125-1|AAD46478.1|  609|Homo sapiens polycystin-2-like protein
           protein.
          Length = 609

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -1

Query: 224 RHRLYITEKL--LTHYFPIFLKKLIKTSFPLVTPHRYFLNSF*IFYFLD 84
           R  + IT  L  L  YF IFL  L   +F +V PH Y+LN      FLD
Sbjct: 20  RKEVEITTTLQELLLYF-IFLINLCILTFGMVNPHMYYLNKVMSSLFLD 67


>AB051444-1|BAB33327.1|  127|Homo sapiens KIAA1657 protein protein.
          Length = 127

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 21/64 (32%), Positives = 32/64 (50%)
 Frame = -1

Query: 194 LTHYFPIFLKKLIKTSFPLVTPHRYFLNSF*IFYFLDQASRYFFL*YEFHNFLVFNFATS 15
           L+ +  + L      S PL  P  +FL+ F  F+F    S   FL + F +FL F+F+ S
Sbjct: 38  LSFFLSLSLSPSFLPSLPLSLPPSFFLSFFLSFFFF--LSFLCFLSF-FLSFLSFSFSLS 94

Query: 14  KNSS 3
            + S
Sbjct: 95  LSLS 98


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,134,761
Number of Sequences: 237096
Number of extensions: 481163
Number of successful extensions: 927
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 76,859,062
effective HSP length: 53
effective length of database: 64,292,974
effective search space used: 1350152454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)