Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F15
         (198 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   0.34 
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    25   1.0  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    23   5.6  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      23   7.4  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    22   9.7  

>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 0.34
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 2   HEAIHCMQVHKEAVDKVPNSLPNRSNIEI 88
           H  +H +Q +K    K+P SLP+ S + +
Sbjct: 137 HRRLHYLQDNKIRPSKIPKSLPSNSPVRL 165


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 14  HCMQVHKEAVDKVPNSLPNRSN 79
           H   VHKE+V K+  +L +R+N
Sbjct: 119 HKTDVHKESVSKLSKNLESRNN 140


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 93  YMVWKVYHLRI*RNVKSRNQVEVKVLTAKTM 185
           Y++WK++HL   +++ S N  EV  L A ++
Sbjct: 233 YLLWKLFHLE--KSISS-NMAEVTRLKADSI 260


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 158 LHLISAFHVPLYPQVVYLPYHIFLFLY 78
           L  + +F  PL    ++   H F+FL+
Sbjct: 21  LFFVCSFFFPLLYSFIFATLHAFVFLF 47


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 8/37 (21%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +2

Query: 2   HEAIHCMQVHKEAVDKVPNSLPN-RSNIEIEIYGMEG 109
           ++ + C+++H+E  + + NS  N    +E+ +    G
Sbjct: 440 NQTMKCLEIHQELSELIRNSSTNYLEPVEVRMQNYSG 476


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 601,520
Number of Sequences: 5004
Number of extensions: 7746
Number of successful extensions: 32
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)