Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F15
         (198 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866...    61   1e-10
11_06_0129 - 20397179-20397537,20397749-20400497                       25   6.4  
03_04_0157 + 17791540-17791681,17792809-17792908,17793386-177934...    25   6.4  
03_02_0101 - 5623661-5623669,5623756-5624408,5624504-5624640,562...    25   8.5  

>09_06_0277 -
           21983049-21983080,21983250-21984788,21986619-21986655,
           21987612-21987665,21987781-21987893,21988272-21988660,
           21988783-21988903,21989245-21989342,21989963-21990153
          Length = 857

 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 25/38 (65%), Positives = 32/38 (84%)
 Frame = +2

Query: 8   AIHCMQVHKEAVDKVPNSLPNRSNIEIEIYGMEGIPPE 121
           AIH +QVHKE+V KVPN+ P R + EIEI+GM+GIPP+
Sbjct: 51  AIHVLQVHKESVTKVPNAKPERESTEIEIFGMQGIPPD 88


>11_06_0129 - 20397179-20397537,20397749-20400497
          Length = 1035

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +2

Query: 29  HKEAVDKVPNSLPNRSNIEIEIYG---MEGIPPEDI 127
           H     K+P SL N SN+ + I G     GI P++I
Sbjct: 300 HNHLHGKIPVSLGNSSNLSMIILGANLFNGIVPQEI 335


>03_04_0157 + 17791540-17791681,17792809-17792908,17793386-17793477,
            17793562-17793620,17794135-17795637,17796478-17796720,
            17796831-17797145,17797571-17797573,17798399-17798638,
            17798975-17799259,17799335-17799556,17800105-17800266,
            17800411-17800545,17802452-17802688,17802787-17802960,
            17803692-17803934
          Length = 1384

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 26   VHKEAVDKVPNSLPNRSNIEIEIYG 100
            + + + DKVPN+ P  ++   ++YG
Sbjct: 1115 ISETSTDKVPNATPTAASASSDLYG 1139


>03_02_0101 -
           5623661-5623669,5623756-5624408,5624504-5624640,
           5626032-5626609
          Length = 458

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 158 LHLISAFHVPLYPQVVYLPYHIFLFLYL 75
           + ++SA  VPL+  VV   +  F+FL+L
Sbjct: 172 IKILSAGTVPLWGGVVITAFDCFIFLFL 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,760,596
Number of Sequences: 37544
Number of extensions: 45456
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 14,793,348
effective HSP length: 45
effective length of database: 13,103,868
effective search space used: 262077360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)