Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F15
         (198 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical pr...    60   2e-10
Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical pr...    60   2e-10
AF016687-9|AAK72064.2|  569|Caenorhabditis elegans Hypothetical ...    26   4.2  
U39646-6|AAK72058.1|  624|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AF067947-3|AAC19231.1|  451|Caenorhabditis elegans Hypothetical ...    25   7.4  

>Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical
           protein B0035.1b protein.
          Length = 341

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 23/36 (63%), Positives = 30/36 (83%)
 Frame = +2

Query: 8   AIHCMQVHKEAVDKVPNSLPNRSNIEIEIYGMEGIP 115
           +IHCMQVHKE +DK+P ++  R NI +EIYGM+GIP
Sbjct: 51  SIHCMQVHKETIDKIPAAVHGRDNIHVEIYGMQGIP 86


>Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical
           protein B0035.1a protein.
          Length = 298

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 23/36 (63%), Positives = 30/36 (83%)
 Frame = +2

Query: 8   AIHCMQVHKEAVDKVPNSLPNRSNIEIEIYGMEGIP 115
           +IHCMQVHKE +DK+P ++  R NI +EIYGM+GIP
Sbjct: 51  SIHCMQVHKETIDKIPAAVHGRDNIHVEIYGMQGIP 86


>AF016687-9|AAK72064.2|  569|Caenorhabditis elegans Hypothetical
           protein T21D12.9b protein.
          Length = 569

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = -2

Query: 134 VPL-YPQVVYLPYHIFLFLYL 75
           +PL YPQVV+L   I+ FL L
Sbjct: 235 IPLVYPQVVFLAVRIYFFLCL 255


>U39646-6|AAK72058.1|  624|Caenorhabditis elegans Hypothetical
           protein F47B7.2c protein.
          Length = 624

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = +2

Query: 11  IHCMQVHK-EAVDKVPNSL---PNRSNIEIEIYGMEGIP 115
           +H  +V + EA DKV N L   P R+  +I+ YG+ G+P
Sbjct: 584 VHAGKVDQLEANDKVKNVLDASPQRTWKDIDGYGVLGVP 622


>AF067947-3|AAC19231.1|  451|Caenorhabditis elegans Hypothetical
           protein T10B5.8 protein.
          Length = 451

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +2

Query: 41  VDKVPNSLPNRSNIEIEIY 97
           VDK   SL NR  I IEIY
Sbjct: 214 VDKYGGSLENRQRIVIEIY 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,324,927
Number of Sequences: 27780
Number of extensions: 42115
Number of successful extensions: 168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 12,740,198
effective HSP length: 45
effective length of database: 11,490,098
effective search space used: 229801960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)