Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_F14
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    27   0.97 
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    26   1.7  
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch...    26   1.7  
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces...    24   5.2  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    24   5.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   6.8  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 26.6 bits (56), Expect = 0.97
 Identities = 14/66 (21%), Positives = 33/66 (50%)
 Frame = +1

Query: 124 HFGALISDFFEKHKLEIHELTNIVTEMFKDITRLIVAQLKELPGKITQVYEELVKLINNM 303
           +F  L S F + + L +  + N+ ++    + + +    + + GK T +   +  +IN+M
Sbjct: 11  YFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGIINDM 70

Query: 304 PIIEAI 321
           P +E +
Sbjct: 71  PELERL 76


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 16/83 (19%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
 Frame = +1

Query: 85  LQEYLESFIDIVAHFGALISDFFEK-HKLEIHELTNIVTEMFKDITRLIVAQLKELPGKI 261
           + +  + F   +A F  ++ +  +   KL+   L+  + ++  +   L    L  +    
Sbjct: 415 MDDGFQRFWQSLASFDMVLDESLQVLKKLQTLHLSFTLGDIIPNYLTLADYLLNFVKTSF 474

Query: 262 TQVYEELVKLINNMPIIEAIKEK 330
            Q+YE +   +NN+ ++E+  EK
Sbjct: 475 AQIYELVCSFVNNVAVMESSSEK 497


>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 442

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 10/40 (25%), Positives = 26/40 (65%)
 Frame = +1

Query: 184 TNIVTEMFKDITRLIVAQLKELPGKITQVYEELVKLINNM 303
           TN++ E+ ++I++ + A + +    +TQ  +E++ L+N +
Sbjct: 35  TNVIDEVSRNISKALEAGMSDKAAYVTQ-GKEIISLLNQL 73


>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = +1

Query: 64  YETLGKMLQEYLESFIDIVAHFGALISDFFEKHKLEIHELTN---IVTEMFKD-ITRLIV 231
           +E L  + QE+ ++ I+I+     L    FE+ +  +  + N   +V E   D I++ I 
Sbjct: 7   FENLANLEQEFGKAEIEILKKQNELFQPLFEQRRDILKTINNFWVVVLEAAGDEISQYIT 66

Query: 232 AQLKELPGKITQVYEE 279
            +   L  K+  +Y E
Sbjct: 67  PEDSVLLEKLENIYVE 82


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 17/72 (23%), Positives = 28/72 (38%)
 Frame = +1

Query: 64  YETLGKMLQEYLESFIDIVAHFGALISDFFEKHKLEIHELTNIVTEMFKDITRLIVAQLK 243
           Y T  K   E      ++++  G   S      KLE   L        KD  RLI A+  
Sbjct: 555 YRTRRKWTDEEENELYEMISQHGCCWSKIIHIQKLENGPLKTFGPTQIKDKARLIKARFM 614

Query: 244 ELPGKITQVYEE 279
           +   ++ ++Y +
Sbjct: 615 K-QNRLQELYSK 625


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 12/55 (21%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +1

Query: 139 ISDFFEKH---KLEIHELTNIVTEMFKDITRLIVAQLKELPGKITQVYEELVKLI 294
           + D FEK     +E+ +  +   E    +T++++ ++  +    +Q+Y EL+ L+
Sbjct: 1   MEDGFEKSLSSSIELLKAESTEIEEKIKLTKILITKVSSISSDASQLYAELIPLL 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,200,986
Number of Sequences: 5004
Number of extensions: 18626
Number of successful extensions: 55
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)